Difference between revisions of "CPD-12481"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.1.148-RXN 2.7.1.148-RXN] == * direction: ** left-to-right * common-name: ** 4-diphosphocytidyl-...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9679 RXN-9679] == * direction: ** left-to-right * common-name: ** sarcosine n-methyltransferase...") |
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Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9679 RXN-9679] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
− | ** | + | ** sarcosine n-methyltransferase |
− | * | + | ** sarcosine-dimethylglycine methyltransferase |
− | ** | + | * synonymous: |
+ | ** apdmt | ||
+ | ** gsdmt | ||
+ | ** gmt | ||
+ | ** s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase | ||
+ | ** apgsmt | ||
+ | ** sarcosine dimethylglycine n-methyltransferase | ||
+ | ** gsmt | ||
+ | ** glycine-sarcosine methyltransferase | ||
+ | ** s-adenosyl-l-methionine:sarcosine n-methyltransferase | ||
+ | ** glycine sarcosine dimethylglycine n-methyltransferase | ||
+ | ** sdmt | ||
+ | ** glycine sarcosine n-methyltransferase | ||
== Reaction formula == | == Reaction formula == | ||
− | * 1 [[ | + | * 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[SARCOSINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[PROTON]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
− | * Gene: [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
+ | * Gene: [[SJ11087]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
− | ** Category: [[ | + | * Gene: [[SJ12128]] |
− | *** Source: [[ | + | ** Category: [[annotation]] |
− | *** Source: [[ | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
− | *** Source: [[ | + | * Gene: [[SJ02540]] |
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ02539]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ12119]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ10116]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ12116]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ03081]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ18177]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ12118]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | * Gene: [[SJ14716]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
+ | </div> | ||
== Pathway(s) == | == Pathway(s) == | ||
− | * [[ | + | * [[P541-PWY]], glycine betaine biosynthesis IV (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=P541-PWY P541-PWY] |
− | ** ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6004]], glycine betaine biosynthesis V (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6004 PWY-6004] |
− | ** ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
== Reconstruction information == | == Reconstruction information == | ||
− | |||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | |||
− | |||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15454 15454] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R07243 R07243] |
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
− | {{#set: common-name= | + | {{#set: common-name=sarcosine-dimethylglycine methyltransferase|sarcosine n-methyltransferase}} |
− | {{#set: | + | {{#set: synonymous=glycine sarcosine dimethylglycine n-methyltransferase|sdmt|s-adenosyl-l-methionine:sarcosine n-methyltransferase|gsdmt|apdmt|sarcosine dimethylglycine n-methyltransferase|glycine sarcosine n-methyltransferase|glycine-sarcosine methyltransferase|gmt|apgsmt|gsmt|s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase}} |
− | {{#set: nb gene associated= | + | {{#set: nb gene associated=11}} |
{{#set: nb pathway associated=2}} | {{#set: nb pathway associated=2}} | ||
− | {{#set: reconstruction category= | + | {{#set: reconstruction category=annotation}} |
− | {{#set: reconstruction tool= | + | {{#set: reconstruction tool=pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
− | {{#set: reconstruction source= | + | {{#set: reconstruction source=saccharina_japonica_genome}} |
Revision as of 09:28, 27 August 2019
Contents
Reaction RXN-9679
- direction:
- left-to-right
- common-name:
- sarcosine n-methyltransferase
- sarcosine-dimethylglycine methyltransferase
- synonymous:
- apdmt
- gsdmt
- gmt
- s-adenosyl-l-methionine:n,n-dimethylglycine n-methyltransferase
- apgsmt
- sarcosine dimethylglycine n-methyltransferase
- gsmt
- glycine-sarcosine methyltransferase
- s-adenosyl-l-methionine:sarcosine n-methyltransferase
- glycine sarcosine dimethylglycine n-methyltransferase
- sdmt
- glycine sarcosine n-methyltransferase
Reaction formula
- 1 S-ADENOSYLMETHIONINE[c] + 1 SARCOSINE[c] => 1 ADENOSYL-HOMO-CYS[c] + 1 DIMETHYL-GLYCINE[c] + 1 PROTON[c]
Gene(s) associated with this reaction
- Gene: SJ11087
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12128
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ02540
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ02539
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12119
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ10116
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12116
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ03081
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ18177
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ12118
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ14716
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
Pathway(s)
- P541-PWY, glycine betaine biosynthesis IV (from glycine): P541-PWY
- 3 reactions found over 3 reactions in the full pathway
- PWY-6004, glycine betaine biosynthesis V (from glycine): PWY-6004
- 3 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links