Difference between revisions of "CPD-13040"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] == * direction: ** left-to-right * common-name: ** ribokinase * ec-number:...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] == * direction: ** reversible * common-name: ** udp-glucose 4-epim...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-RXN RIBOKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPGLUCEPIM-RXN UDPGLUCEPIM-RXN] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** ribokinase
+
** udp-glucose 4-epimerase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.1.15 ec-2.7.1.15]
+
** [http://enzyme.expasy.org/EC/5.1.3.2 ec-5.1.3.2]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CPD-10330]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[CPD-15318]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-12575]][c] '''<=>''' 1 [[CPD-14553]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ01736]]
+
* Gene: [[SJ16452]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ07367]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ19552]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
* Gene: [[SJ08247]]
+
* Gene: [[SJ17935]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[RIBOKIN-PWY]], ribose phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=RIBOKIN-PWY RIBOKIN-PWY]
+
* [[PWY-7344]], UDP-&alpha;-D-galactose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7344 PWY-7344]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[COLANSYN-PWY]], colanic acid building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=COLANSYN-PWY COLANSYN-PWY]
 +
** '''6''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-6397]], mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6397 PWY-6397]
 +
** '''1''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-7328]], superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7328 PWY-7328]
 +
** '''5''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-3821]], D-galactose detoxification: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3821 PWY-3821]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13698 13698]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22171 22171]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01051 R01051]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00291 R00291]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P44331 P44331]
+
** [http://www.uniprot.org/uniprot/P35673 P35673]
−
** [http://www.uniprot.org/uniprot/P36945 P36945]
+
** [http://www.uniprot.org/uniprot/P22715 P22715]
−
** [http://www.uniprot.org/uniprot/Q57849 Q57849]
+
** [http://www.uniprot.org/uniprot/P21977 P21977]
−
** [http://www.uniprot.org/uniprot/Q9CF42 Q9CF42]
+
** [http://www.uniprot.org/uniprot/P24325 P24325]
−
** [http://www.uniprot.org/uniprot/P25332 P25332]
+
** [http://www.uniprot.org/uniprot/Q9CE66 Q9CE66]
−
** [http://www.uniprot.org/uniprot/P0A9J6 P0A9J6]
+
** [http://www.uniprot.org/uniprot/Q57664 Q57664]
−
** [http://www.uniprot.org/uniprot/O93727 O93727]
+
** [http://www.uniprot.org/uniprot/P55180 P55180]
−
{{#set: direction=left-to-right}}
+
** [http://www.uniprot.org/uniprot/Q9PNG3 Q9PNG3]
−
{{#set: common-name=ribokinase}}
+
** [http://www.uniprot.org/uniprot/P56997 P56997]
−
{{#set: ec-number=ec-2.7.1.15}}
+
** [http://www.uniprot.org/uniprot/Q59083 Q59083]
 +
** [http://www.uniprot.org/uniprot/Q44016 Q44016]
 +
** [http://www.uniprot.org/uniprot/Q45291 Q45291]
 +
** [http://www.uniprot.org/uniprot/P96995 P96995]
 +
** [http://www.uniprot.org/uniprot/P45602 P45602]
 +
** [http://www.uniprot.org/uniprot/P18645 P18645]
 +
** [http://www.uniprot.org/uniprot/P26503 P26503]
 +
** [http://www.uniprot.org/uniprot/P40801 P40801]
 +
** [http://www.uniprot.org/uniprot/Q05026 Q05026]
 +
** [http://www.uniprot.org/uniprot/P56985 P56985]
 +
** [http://www.uniprot.org/uniprot/Q51148 Q51148]
 +
** [http://www.uniprot.org/uniprot/Q56093 Q56093]
 +
** [http://www.uniprot.org/uniprot/Q42605 Q42605]
 +
** [http://www.uniprot.org/uniprot/Q60109 Q60109]
 +
** [http://www.uniprot.org/uniprot/P72903 P72903]
 +
** [http://www.uniprot.org/uniprot/P72915 P72915]
 +
** [http://www.uniprot.org/uniprot/O66256 O66256]
 +
** [http://www.uniprot.org/uniprot/O64749 O64749]
 +
** [http://www.uniprot.org/uniprot/Q9SN58 Q9SN58]
 +
** [http://www.uniprot.org/uniprot/Q8VZ26 Q8VZ26]
 +
** [http://www.uniprot.org/uniprot/Q43070 Q43070]
 +
** [http://www.uniprot.org/uniprot/Q9T0A7 Q9T0A7]
 +
** [http://www.uniprot.org/uniprot/O65780 O65780]
 +
** [http://www.uniprot.org/uniprot/O65781 O65781]
 +
** [http://www.uniprot.org/uniprot/Q9RMC0 Q9RMC0]
 +
** [http://www.uniprot.org/uniprot/P04397 P04397]
 +
** [http://www.uniprot.org/uniprot/P09147 P09147]
 +
** [http://www.uniprot.org/uniprot/P13226 P13226]
 +
** [http://www.uniprot.org/uniprot/P09609 P09609]
 +
</div>
 +
{{#set: direction=reversible}}
 +
{{#set: common-name=udp-glucose 4-epimerase}}
 +
{{#set: ec-number=ec-5.1.3.2}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb gene associated=3}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=8}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction UDPGLUCEPIM-RXN

  • direction:
    • reversible
  • common-name:
    • udp-glucose 4-epimerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7344, UDP-α-D-galactose biosynthesis: PWY-7344
    • 1 reactions found over 1 reactions in the full pathway
  • COLANSYN-PWY, colanic acid building blocks biosynthesis: COLANSYN-PWY
    • 6 reactions found over 1 reactions in the full pathway
  • PWY-6397, mycolyl-arabinogalactan-peptidoglycan complex biosynthesis: PWY-6397
    • 1 reactions found over 17 reactions in the full pathway
  • PWY-7328, superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis: PWY-7328
    • 5 reactions found over 2 reactions in the full pathway
  • PWY66-422, D-galactose degradation V (Leloir pathway): PWY66-422
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-3821, D-galactose detoxification: PWY-3821
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6527, stachyose degradation: PWY-6527
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-6317, D-galactose degradation I (Leloir pathway): PWY-6317
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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