Difference between revisions of "CPD-13080"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-220 RXN1G-220] == * direction: ** left-to-right * common-name: ** cis,cis-delta17,35-3-hydrox...")
(Created page with "Category:gene == Gene SJ16737 == * transcription-direction: ** negative * right-end-position: ** 66307 * left-end-position: ** 56088 * centisome-position: ** 8.223529...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-220 RXN1G-220] ==
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== Gene SJ16737 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** negative
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* common-name:
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* right-end-position:
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** cis,cis-delta17,35-3-hydroxyc54:2-[acyl-carrier protein] dehydratase
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** 66307
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** 3-cis,cis-delta17,35-3-hydroxyc54:2-[acyl-carrier protein] dehydratase
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* left-end-position:
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* ec-number:
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** 56088
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** [http://enzyme.expasy.org/EC/4.2.1.m2 ec-4.2.1.m2]
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* centisome-position:
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== Reaction formula ==
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** 8.223529   
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* 1 [[cis-cis-D17-35-3-hydroxyC54-2-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[trans-D2-cis-cis-D17-35-C54-3-ACPs]][c]
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== Organism(s) associated with this gene  ==
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== Gene(s) associated with this reaction  ==
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* [[S.japonica_carotenoid_curated]]
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* Gene: [[SJ10275]]
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[3.6.3.1-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s)  ==
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* [[3.6.3.44-RXN]]
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* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
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** Category: [[annotation]]
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** '''26''' reactions found over '''182''' reactions in the full pathway
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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* [[ATPASE-RXN]]
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[annotation]]
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== External links  ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: direction=left-to-right}}
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** Category: [[orthology]]
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{{#set: common-name=cis,cis-delta17,35-3-hydroxyc54:2-[acyl-carrier protein] dehydratase|3-cis,cis-delta17,35-3-hydroxyc54:2-[acyl-carrier protein] dehydratase}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: ec-number=ec-4.2.1.m2}}
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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{{#set: nb gene associated=1}}
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** Category: [[annotation]]
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{{#set: nb pathway associated=1}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: reconstruction category=annotation}}
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* [[RXN-12195]]
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{{#set: reconstruction tool=pathwaytools}}
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** Category: [[annotation]]
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{{#set: reconstruction comment=n.a}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: reconstruction source=saccharina_japonica_genome}}
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* [[RXN-12196]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN0-5462]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[TRANS-RXN-311]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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* [[PWY-7210]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7198]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7184]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6545]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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{{#set: transcription-direction=negative}}
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{{#set: right-end-position=66307}}
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{{#set: left-end-position=56088}}
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{{#set: centisome-position=8.223529    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=8}}
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{{#set: nb pathway associated=4}}

Revision as of 09:28, 27 August 2019

Gene SJ16737

  • transcription-direction:
    • negative
  • right-end-position:
    • 66307
  • left-end-position:
    • 56088
  • centisome-position:
    • 8.223529

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway




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