Difference between revisions of "CPD-13118"

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(Created page with "Category:gene == Gene SJ02977 == * transcription-direction: ** positive * right-end-position: ** 178492 * left-end-position: ** 174522 * centisome-position: ** 32.893738...")
(Created page with "Category:metabolite == Metabolite CPD-13118 == * common-name: ** gdp-β-l-fucose * smiles: ** cc4(oc(op(op(occ3(c(c(c(n2(c1(=c(c(nc(=n1)n)=o)n=c2)))o3)o)o))([o-])=o)([...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:gene]]
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[[Category:metabolite]]
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== Gene SJ02977 ==
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== Metabolite CPD-13118 ==
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* transcription-direction:
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* common-name:
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** positive
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** gdp-β-l-fucose
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* right-end-position:
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* smiles:
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** 178492
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** cc4(oc(op(op(occ3(c(c(c(n2(c1(=c(c(nc(=n1)n)=o)n=c2)))o3)o)o))([o-])=o)([o-])=o)c(c(c4o)o)o)
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* left-end-position:
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* inchi-key:
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** 174522
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** lqebexmhblqmdb-jgqubwhwsa-l
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* centisome-position:
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* molecular-weight:
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** 32.893738   
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** 587.33
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to consume the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[2.4.1.221-RXN]]
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== Reaction(s) associated ==
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* [[2.4.1.68-RXN]]
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* [[ATPASE-RXN]]
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* [[GALACTOSIDE-2-L-FUCOSYLTRANSFERASE-RXN]]
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** Category: [[annotation]]
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* [[GALACTOSIDE-3-FUCOSYLTRANSFERASE-RXN]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9463]]
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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== Reaction(s) known to produce the compound ==
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** Category: [[annotation]]
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* [[1.1.1.271-RXN]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[2.4.1.221-RXN]]
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* [[RXN-12195]]
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== Reaction(s) of unknown directionality ==
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** Category: [[annotation]]
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{{#set: common-name=gdp-β-l-fucose}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: inchi-key=inchikey=lqebexmhblqmdb-jgqubwhwsa-l}}
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* [[RXN-12196]]
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{{#set: molecular-weight=587.33}}
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN0-5462]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== Pathway(s) associated ==
 
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* [[PWY-7210]]
 
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** '''8''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7198]]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7184]]
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6545]]
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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{{#set: transcription-direction=positive}}
 
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{{#set: right-end-position=178492}}
 
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{{#set: left-end-position=174522}}
 
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{{#set: centisome-position=32.893738    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
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{{#set: nb reaction associated=5}}
 
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{{#set: nb pathway associated=4}}
 

Latest revision as of 11:15, 18 March 2021

Metabolite CPD-13118

  • common-name:
    • gdp-β-l-fucose
  • smiles:
    • cc4(oc(op(op(occ3(c(c(c(n2(c1(=c(c(nc(=n1)n)=o)n=c2)))o3)o)o))([o-])=o)([o-])=o)c(c(c4o)o)o)
  • inchi-key:
    • lqebexmhblqmdb-jgqubwhwsa-l
  • molecular-weight:
    • 587.33

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-13118&oldid=138467"