Difference between revisions of "CPD-13376"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5-FORMYL-THF-CYCLO-LIGASE-RXN 5-FORMYL-THF-CYCLO-LIGASE-RXN] == * direction: ** left-to-right * com...")
(Created page with "Category:metabolite == Metabolite CPD-13376 == * common-name: ** xxlg xyloglucan oligosaccharide * smiles: ** c8(c(c(c(c(occ7(oc(oc2(c(o)c(o)c(oc(coc1(c(c(c(co1)o)o)o))2)o...")
 
(8 intermediate revisions by 4 users not shown)
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5-FORMYL-THF-CYCLO-LIGASE-RXN 5-FORMYL-THF-CYCLO-LIGASE-RXN] ==
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== Metabolite CPD-13376 ==
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** 5-formyltetrahydrofolate cyclo-ligase
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** xxlg xyloglucan oligosaccharide
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* ec-number:
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* smiles:
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** [http://enzyme.expasy.org/EC/6.3.3.2 ec-6.3.3.2]
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** c8(c(c(c(c(occ7(oc(oc2(c(o)c(o)c(oc(coc1(c(c(c(co1)o)o)o))2)oc5(c(o)c(o)c(oc(coc3(c(c(c(co3)o)o)oc4(c(c(c(c(o4)co)o)o)o)))5)oc6(c(o)c(o)c(o)oc(co)6))))c(o)c(o)c(o)7))o8)o)o)o)
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== Reaction formula ==
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* inchi-key:
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* 1 [[ATP]][c] '''+''' 1 [[N5-Formyl-THF-Glu-N]][c] '''=>''' 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c]
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** ujniquvnfjifmg-ikgyadnmsa-n
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== Gene(s) associated with this reaction  ==
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* molecular-weight:
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* Gene: [[SJ02064]]
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** 1225.073
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** Category: [[annotation]]
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== Reaction(s) known to consume the compound ==
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXN-12398]]
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** Category: [[orthology]]
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== Reaction(s) known to produce the compound ==
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Reaction(s) of unknown directionality ==
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* Gene: [[SJ19600]]
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{{#set: common-name=xxlg xyloglucan oligosaccharide}}
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** Category: [[annotation]]
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{{#set: inchi-key=inchikey=ujniquvnfjifmg-ikgyadnmsa-n}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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{{#set: molecular-weight=1225.073}}
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== Pathway(s) ==
 
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* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
 
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** '''9''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
 
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** '''9''' reactions found over '''12''' reactions in the full pathway
 
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* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10489 10489]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R02301 R02301]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P80405 P80405]
 
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** [http://www.uniprot.org/uniprot/P49914 P49914]
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=5-formyltetrahydrofolate cyclo-ligase}}
 
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{{#set: ec-number=ec-6.3.3.2}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=3}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Latest revision as of 11:15, 18 March 2021

Metabolite CPD-13376

  • common-name:
    • xxlg xyloglucan oligosaccharide
  • smiles:
    • c8(c(c(c(c(occ7(oc(oc2(c(o)c(o)c(oc(coc1(c(c(c(co1)o)o)o))2)oc5(c(o)c(o)c(oc(coc3(c(c(c(co3)o)o)oc4(c(c(c(c(o4)co)o)o)o)))5)oc6(c(o)c(o)c(o)oc(co)6))))c(o)c(o)c(o)7))o8)o)o)o)
  • inchi-key:
    • ujniquvnfjifmg-ikgyadnmsa-n
  • molecular-weight:
    • 1225.073

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-13376&oldid=138702"