Difference between revisions of "CPD-13397"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12448 RXN-12448] == * direction: ** reversible * common-name: ** alcohol dehydrogenase ** alcoh...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DALADALALIG-RXN DALADALALIG-RXN] == * direction: ** left-to-right * common-name: ** d-alanine-d-ala...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12448 RXN-12448] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DALADALALIG-RXN DALADALALIG-RXN] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
 
* common-name:
 
* common-name:
−
** alcohol dehydrogenase
+
** d-alanine-d-alanine ligase
−
** alcohol dehydrogenase (nad)
 
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/1.1.1.1 ec-1.1.1.1]
+
** [http://enzyme.expasy.org/EC/6.3.2.4 ec-6.3.2.4]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[NAD]][c] '''+''' 1 [[Secondary-Alcohols]][c] '''<=>''' 1 [[LONG-CHAIN-KETONE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[ATP]][c] '''+''' 2 [[D-ALANINE]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[D-ALA-D-ALA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ21601]]
+
* Gene: [[SJ17851]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ07759]]
+
* Gene: [[SJ12670]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ02214]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
−
* Gene: [[SJ14768]]
+
* Gene: [[SJ12870]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ06726]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7953]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7953 PWY-7953]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6386]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6386 PWY-6386]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6387]], UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6387 PWY-6387]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11224 11224]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00624 R00624]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01150 R01150]
−
* RHEA:
+
* UNIPROT:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10743 10743]
+
** [http://www.uniprot.org/uniprot/O83676 O83676]
−
{{#set: direction=reversible}}
+
** [http://www.uniprot.org/uniprot/O66806 O66806]
−
{{#set: common-name=alcohol dehydrogenase (nad)|alcohol dehydrogenase}}
+
** [http://www.uniprot.org/uniprot/P46805 P46805]
−
{{#set: ec-number=ec-1.1.1.1}}
+
** [http://www.uniprot.org/uniprot/P0A1F0 P0A1F0]
−
{{#set: nb gene associated=3}}
+
** [http://www.uniprot.org/uniprot/P0A6J8 P0A6J8]
−
{{#set: nb pathway associated=0}}
+
** [http://www.uniprot.org/uniprot/P07862 P07862]
 +
** [http://www.uniprot.org/uniprot/P96612 P96612]
 +
** [http://www.uniprot.org/uniprot/Q9ZDS6 Q9ZDS6]
 +
** [http://www.uniprot.org/uniprot/Q9CIL5 Q9CIL5]
 +
** [http://www.uniprot.org/uniprot/P44405 P44405]
 +
** [http://www.uniprot.org/uniprot/Q9PPC2 Q9PPC2]
 +
** [http://www.uniprot.org/uniprot/Q9JSZ9 Q9JSZ9]
 +
** [http://www.uniprot.org/uniprot/P35660 P35660]
 +
** [http://www.uniprot.org/uniprot/P73632 P73632]
 +
** [http://www.uniprot.org/uniprot/Q9XAK7 Q9XAK7]
 +
** [http://www.uniprot.org/uniprot/Q9RLE4 Q9RLE4]
 +
</div>
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=d-alanine-d-alanine ligase}}
 +
{{#set: ec-number=ec-6.3.2.4}}
 +
{{#set: nb gene associated=5}}
 +
{{#set: nb pathway associated=3}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction DALADALALIG-RXN

  • direction:
    • left-to-right
  • common-name:
    • d-alanine-d-alanine ligase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7953, UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing): PWY-7953
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6386, UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing): PWY-6386
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6387, UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing): PWY-6387
    • 2 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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