Difference between revisions of "CPD-13533"

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(Created page with "Category:gene == Gene SJ13468 == * transcription-direction: ** positive * right-end-position: ** 721472 * left-end-position: ** 708880 * centisome-position: ** 97.29478...")
(Created page with "Category:metabolite == Metabolite CPD-13533 == * common-name: ** (3r)-3-hydroxypentanoyl-coa * smiles: ** ccc(cc(sccnc(ccnc(c(c(cop(=o)([o-])op(occ1(oc(c(c1op([o-])([o-])=...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:gene]]
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[[Category:metabolite]]
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== Gene SJ13468 ==
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== Metabolite CPD-13533 ==
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* transcription-direction:
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* common-name:
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** positive
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** (3r)-3-hydroxypentanoyl-coa
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* right-end-position:
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* smiles:
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** 721472
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** ccc(cc(sccnc(ccnc(c(c(cop(=o)([o-])op(occ1(oc(c(c1op([o-])([o-])=o)o)n3(c=nc2(c(=nc=nc=23)n))))([o-])=o)(c)c)o)=o)=o)=o)o
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* left-end-position:
+
* inchi-key:
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** 708880
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** yygypcrwzmlsgk-orumcernsa-j
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* centisome-position:
+
* molecular-weight:
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** 97.29478   
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** 863.619
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to consume the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[RXN-12560]]
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== Reaction(s) associated ==
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== Reaction(s) known to produce the compound ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) of unknown directionality ==
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* [[ACOA120OR]]
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{{#set: common-name=(3r)-3-hydroxypentanoyl-coa}}
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** Category: [[orthology]]
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{{#set: inchi-key=inchikey=yygypcrwzmlsgk-orumcernsa-j}}
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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{{#set: molecular-weight=863.619}}
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* [[ACOA140OR]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* [[ACOA160OR]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* [[ACOA40OR]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* [[ACOA80OR]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* [[ACYL-COA-OXIDASE-RXN]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[ACYLCOADEHYDROG-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-10696]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-10706]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-10707]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-11026]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-12518]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-12669]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-14576]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-14771]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-14775]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-14785]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-14789]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-14796]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-16134]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-17113]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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</div>
 
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== Pathway(s) associated ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[FAO-PWY]]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-735]]
 
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** '''16''' reactions found over '''19''' reactions in the full pathway
 
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* [[PWY-7007]]
 
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** '''4''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-7288]]
 
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** '''4''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-5136]]
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY66-391]]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-6837]]
 
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** '''4''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-6920]]
 
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** '''5''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-7291]]
 
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** '''2''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7337]]
 
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** '''6''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-7338]]
 
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** '''6''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-7340]]
 
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** '''5''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-7606]]
 
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** '''8''' reactions found over '''14''' reactions in the full pathway
 
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* [[PWY-7726]]
 
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** '''8''' reactions found over '''13''' reactions in the full pathway
 
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</div>
 
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{{#set: transcription-direction=positive}}
 
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{{#set: right-end-position=721472}}
 
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{{#set: left-end-position=708880}}
 
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{{#set: centisome-position=97.29478    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
−
{{#set: nb reaction associated=22}}
 
−
{{#set: nb pathway associated=14}}
 

Latest revision as of 11:14, 18 March 2021

Metabolite CPD-13533

  • common-name:
    • (3r)-3-hydroxypentanoyl-coa
  • smiles:
    • ccc(cc(sccnc(ccnc(c(c(cop(=o)([o-])op(occ1(oc(c(c1op([o-])([o-])=o)o)n3(c=nc2(c(=nc=nc=23)n))))([o-])=o)(c)c)o)=o)=o)=o)o
  • inchi-key:
    • yygypcrwzmlsgk-orumcernsa-j
  • molecular-weight:
    • 863.619

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-13533&oldid=138316"