Difference between revisions of "CPD-13695"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DAPASYN-RXN DAPASYN-RXN] == * direction: ** reversible * common-name: ** 7,8-diaminopelargonic acid...")
(Created page with "Category:metabolite == Metabolite CPD-14404 == * common-name: ** 3-oxo-dihomo γ-linolenoyl-coa * smiles: ** cccccc=ccc=ccc=cccccc(=o)cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(...")
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DAPASYN-RXN DAPASYN-RXN] ==
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== Metabolite CPD-14404 ==
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* direction:
 
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** reversible
 
 
* common-name:
 
* common-name:
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** 7,8-diaminopelargonic acid synthase
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** 3-oxo-dihomo γ-linolenoyl-coa
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* ec-number:
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* smiles:
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** [http://enzyme.expasy.org/EC/2.6.1.62 ec-2.6.1.62]
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** cccccc=ccc=ccc=cccccc(=o)cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
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== Reaction formula ==
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* inchi-key:
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* 1 [[8-AMINO-7-OXONONANOATE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''<=>''' 1 [[DIAMINONONANOATE]][c] '''+''' 1 [[S-ADENOSYL-4-METHYLTHIO-2-OXOBUTANOATE]][c]
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** djfxnrbquufios-ddquopdjsa-j
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== Gene(s) associated with this reaction  ==
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* molecular-weight:
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* Gene: [[SJ14599]]
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** 1065.958
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** Category: [[annotation]]
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== Reaction(s) known to consume the compound ==
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXN-12968]]
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** Category: [[orthology]]
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== Reaction(s) known to produce the compound ==
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[RXN-12777]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Reaction(s) of unknown directionality ==
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== Pathway(s) ==
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{{#set: common-name=3-oxo-dihomo &gamma;-linolenoyl-coa}}
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* [[PWY0-1507]], biotin biosynthesis from 8-amino-7-oxononanoate I: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1507 PWY0-1507]
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{{#set: inchi-key=inchikey=djfxnrbquufios-ddquopdjsa-j}}
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** '''3''' reactions found over '''3''' reactions in the full pathway
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{{#set: molecular-weight=1065.958}}
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16864 16864]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R03231 R03231]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q58696 Q58696]
 
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** [http://www.uniprot.org/uniprot/P53555 P53555]
 
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** [http://www.uniprot.org/uniprot/P44426 P44426]
 
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** [http://www.uniprot.org/uniprot/Q9JV96 Q9JV96]
 
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** [http://www.uniprot.org/uniprot/Q9PIJ2 Q9PIJ2]
 
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** [http://www.uniprot.org/uniprot/P46395 P46395]
 
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** [http://www.uniprot.org/uniprot/P53656 P53656]
 
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** [http://www.uniprot.org/uniprot/P22805 P22805]
 
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** [http://www.uniprot.org/uniprot/P45488 P45488]
 
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** [http://www.uniprot.org/uniprot/P12995 P12995]
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=7,8-diaminopelargonic acid synthase}}
 
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{{#set: ec-number=ec-2.6.1.62}}
 
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{{#set: nb gene associated=1}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana}}
 

Revision as of 20:38, 18 December 2020

Metabolite CPD-14404

  • common-name:
    • 3-oxo-dihomo γ-linolenoyl-coa
  • smiles:
    • cccccc=ccc=ccc=cccccc(=o)cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
  • inchi-key:
    • djfxnrbquufios-ddquopdjsa-j
  • molecular-weight:
    • 1065.958

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

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