Difference between revisions of "CPD-13855"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-name...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7658 RXN-7658] == * direction: ** reversible * common-name: ** geranylgeranyl diphosphate reduc...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7658 RXN-7658] ==
 
* direction:
 
* direction:
−
** left-to-right
+
** reversible
 
* common-name:
 
* common-name:
−
** cysteine-trna ligase
+
** geranylgeranyl diphosphate reductase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/6.1.1.16 ec-6.1.1.16]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[CYS]][c] '''+''' 1 [[CYS-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[CPD-7002]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[GERANYLGERANYL-PP]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ19796]]
+
* Gene: [[SJ15264]]
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ09098]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
* Gene: [[SJ12227]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ21439]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
Line 29: Line 14:
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
* [[PWY-5063]], phytyl diphosphate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5063 PWY-5063]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17774 17774]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03650 R03650]
+
** [http://www.genome.jp/dbget-bin/www_bget?R08754 R08754]
−
* UNIPROT:
+
{{#set: direction=reversible}}
−
** [http://www.uniprot.org/uniprot/Q9PPB8 Q9PPB8]
+
{{#set: common-name=geranylgeranyl diphosphate reductase}}
−
** [http://www.uniprot.org/uniprot/Q06752 Q06752]
+
{{#set: nb gene associated=1}}
−
** [http://www.uniprot.org/uniprot/P43816 P43816]
 
−
** [http://www.uniprot.org/uniprot/O29836 O29836]
 
−
** [http://www.uniprot.org/uniprot/Q9CEJ0 Q9CEJ0]
 
−
** [http://www.uniprot.org/uniprot/O58370 O58370]
 
−
** [http://www.uniprot.org/uniprot/O83129 O83129]
 
−
** [http://www.uniprot.org/uniprot/Q9ZE62 Q9ZE62]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKW6 Q9ZKW6]
 
−
** [http://www.uniprot.org/uniprot/Q9WZH8 Q9WZH8]
 
−
** [http://www.uniprot.org/uniprot/P41259 P41259]
 
−
** [http://www.uniprot.org/uniprot/O51545 O51545]
 
−
** [http://www.uniprot.org/uniprot/Q9Z6X4 Q9Z6X4]
 
−
** [http://www.uniprot.org/uniprot/O67163 O67163]
 
−
** [http://www.uniprot.org/uniprot/Q9JWJ3 Q9JWJ3]
 
−
** [http://www.uniprot.org/uniprot/P47495 P47495]
 
−
** [http://www.uniprot.org/uniprot/P75423 P75423]
 
−
** [http://www.uniprot.org/uniprot/P74330 P74330]
 
−
** [http://www.uniprot.org/uniprot/Q9UWP2 Q9UWP2]
 
−
** [http://www.uniprot.org/uniprot/P21888 P21888]
 
−
</div>
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=cysteine-trna ligase}}
 
−
{{#set: ec-number=ec-6.1.1.16}}
 
−
{{#set: nb gene associated=4}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:25, 26 August 2019

Reaction RXN-7658

  • direction:
    • reversible
  • common-name:
    • geranylgeranyl diphosphate reductase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-5063, phytyl diphosphate biosynthesis: PWY-5063
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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