Difference between revisions of "CPD-14419"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ07149 == * transcription-direction: ** positive * right-end-position: ** 60951 * left-end-position: ** 33852 * centisome-position: ** 48.443737...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10704 RXN-10704] == * direction: ** left-to-right * common-name: ** opc6-trans-2-enoyl-coa hydr...")
Line 1: Line 1:
−
[[Category:gene]]
+
[[Category:reaction]]
−
== Gene SJ07149 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10704 RXN-10704] ==
−
* transcription-direction:
+
* direction:
−
** positive
+
** left-to-right
−
* right-end-position:
+
* common-name:
−
** 60951
+
** opc6-trans-2-enoyl-coa hydratase
−
* left-end-position:
+
** enoyl-coa hydratase
−
** 33852
+
* ec-number:
−
* centisome-position:
+
** [http://enzyme.expasy.org/EC/4.2.1.17 ec-4.2.1.17]
−
** 48.443737   
+
== Reaction formula ==
−
== Organism(s) associated with this gene  ==
+
* 1 [[CPD-11522]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-11523]][c]
−
* [[S.japonica_carotenoid_curated]]
+
== Gene(s) associated with this reaction  ==
−
== Reaction(s) associated ==
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[3.4.25.1-RXN]]
+
* Gene: [[SJ03584]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ14591]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ07211]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ21390]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ10275]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03913]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
{{#set: transcription-direction=positive}}
+
</div>
−
{{#set: right-end-position=60951}}
+
== Pathway(s)  ==
−
{{#set: left-end-position=33852}}
+
* [[PWY-735]], jasmonic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735]
−
{{#set: centisome-position=48.443737    }}
+
** '''16''' reactions found over '''19''' reactions in the full pathway
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
+
== Reconstruction information  ==
−
{{#set: nb reaction associated=1}}
+
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
== External links  ==
 +
{{#set: direction=left-to-right}}
 +
{{#set: common-name=opc6-trans-2-enoyl-coa hydratase|enoyl-coa hydratase}}
 +
{{#set: ec-number=ec-4.2.1.17}}
 +
{{#set: nb gene associated=6}}
 +
{{#set: nb pathway associated=1}}
 +
{{#set: reconstruction category=annotation|orthology}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}
 +
{{#set: reconstruction comment=n.a}}
 +
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:28, 27 August 2019

Reaction RXN-10704

  • direction:
    • left-to-right
  • common-name:
    • opc6-trans-2-enoyl-coa hydratase
    • enoyl-coa hydratase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-735, jasmonic acid biosynthesis: PWY-735
    • 16 reactions found over 19 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-14419&oldid=34412"