Difference between revisions of "CPD-14424"

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(Created page with "Category:gene == Gene SJ17700 == * transcription-direction: ** negative * right-end-position: ** 37855 * left-end-position: ** 23235 * centisome-position: ** 9.023020...")
 
(Created page with "Category:metabolite == Metabolite CPD-14424 == * common-name: ** (5z,8z,11z,14z,17z)-3r-hydroxy-docosapentaenoyl-coa * smiles: ** ccc=ccc=ccc=ccc=ccc=ccccc(o)cc(=o)sccnc(=...")
 
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[[Category:gene]]
+
[[Category:metabolite]]
== Gene SJ17700 ==
+
== Metabolite CPD-14424 ==
* transcription-direction:
+
* common-name:
** negative
+
** (5z,8z,11z,14z,17z)-3r-hydroxy-docosapentaenoyl-coa
* right-end-position:
+
* smiles:
** 37855
+
** ccc=ccc=ccc=ccc=ccc=ccccc(o)cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
* left-end-position:
+
* inchi-key:
** 23235
+
** kidydclnvxonef-pybsmvoosa-j
* centisome-position:
+
* molecular-weight:
** 9.023020   
+
** 1091.996
== Organism(s) associated with this gene  ==
+
== Reaction(s) known to consume the compound ==
* [[S.japonica_carotenoid_curated]]
+
* [[RXN-13444]]
== Reaction(s) associated ==
+
== Reaction(s) known to produce the compound ==
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[RXN-13443]]
* [[1.1.1.145-RXN]]
+
== Reaction(s) of unknown directionality ==
** Category: [[annotation]]
+
{{#set: common-name=(5z,8z,11z,14z,17z)-3r-hydroxy-docosapentaenoyl-coa}}
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
{{#set: inchi-key=inchikey=kidydclnvxonef-pybsmvoosa-j}}
** Category: [[orthology]]
+
{{#set: molecular-weight=1091.996}}
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[RXN-12693]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[RXN-12747]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[RXN-12789]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[RXN66-342]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXN66-350]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXN66-353]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
</div>
 
== Pathway(s) associated ==
 
* [[PWY-6946]]
 
** '''6''' reactions found over '''22''' reactions in the full pathway
 
* [[PWY-6944]]
 
** '''2''' reactions found over '''25''' reactions in the full pathway
 
* [[PWY-6948]]
 
** '''2''' reactions found over '''18''' reactions in the full pathway
 
* [[PWY66-378]]
 
** '''3''' reactions found over '''6''' reactions in the full pathway
 
* [[PWY-7299]]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
{{#set: transcription-direction=negative}}
 
{{#set: right-end-position=37855}}
 
{{#set: left-end-position=23235}}
 
{{#set: centisome-position=9.023020    }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=7}}
 
{{#set: nb pathway associated=5}}
 

Latest revision as of 11:12, 18 March 2021

Metabolite CPD-14424

  • common-name:
    • (5z,8z,11z,14z,17z)-3r-hydroxy-docosapentaenoyl-coa
  • smiles:
    • ccc=ccc=ccc=ccc=ccc=ccccc(o)cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
  • inchi-key:
    • kidydclnvxonef-pybsmvoosa-j
  • molecular-weight:
    • 1091.996

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality