Difference between revisions of "CPD-14447"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11245 RXN-11245] == * direction: ** left-to-right * common-name: ** 3-hydroxyacyl-coa dehydroge...")
(Created page with "Category:gene == Gene SJ01932 == * transcription-direction: ** positive * right-end-position: ** 114343 * left-end-position: ** 110218 * centisome-position: ** 76.66699...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11245 RXN-11245] ==
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== Gene SJ01932 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** positive
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* common-name:
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* right-end-position:
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** 3-hydroxyacyl-coa dehydrogenase
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** 114343
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* ec-number:
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* left-end-position:
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** [http://enzyme.expasy.org/EC/1.1.1.35 ec-1.1.1.35]
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** 110218
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== Reaction formula ==
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* centisome-position:
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* 1 [[CPD-12199]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[CPD-10600]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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** 76.66699   
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[S.japonica_carotenoid_curated]]
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* Gene: [[SJ16470]]
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== Reaction(s) associated ==
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* [[PMPOXI-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[SJ03584]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[PNPOXI-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[SJ06127]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [[PYRIDOXINE-4-OXIDASE-RXN]]
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* Gene: [[SJ16180]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ21390]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ07211]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* Gene: [[SJ17348]]
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== Pathway(s) associated ==
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** Category: [[annotation]]
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* [[PLPSAL-PWY]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* Gene: [[SJ01444]]
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* [[PWY-7204]]
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** Category: [[annotation]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[PYRIDOXSYN-PWY]]
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</div>
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** '''3''' reactions found over '''7''' reactions in the full pathway
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== Pathway(s)  ==
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* [[PWY-7282]]
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* [[PWY-6435]], 4-hydroxybenzoate biosynthesis III (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-5499]]
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== Reconstruction information  ==
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: transcription-direction=positive}}
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: right-end-position=114343}}
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== External links  ==
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{{#set: left-end-position=110218}}
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{{#set: direction=left-to-right}}
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{{#set: centisome-position=76.66699    }}
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{{#set: common-name=3-hydroxyacyl-coa dehydrogenase}}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: ec-number=ec-1.1.1.35}}
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{{#set: nb reaction associated=3}}
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{{#set: nb gene associated=8}}
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{{#set: nb pathway associated=5}}
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 09:28, 27 August 2019

Gene SJ01932

  • transcription-direction:
    • positive
  • right-end-position:
    • 114343
  • left-end-position:
    • 110218
  • centisome-position:
    • 76.66699

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PLPSAL-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7204
    • 9 reactions found over 9 reactions in the full pathway
  • PYRIDOXSYN-PWY
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7282
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5499
    • 1 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-14447&oldid=34260"