Difference between revisions of "CPD-14901"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-171 RXN-171] == * direction: ** left-to-right * ec-number: ** [http://enzyme.expasy.org/EC/1.14...")
(Created page with "Category:gene == Gene SJ08953 == * transcription-direction: ** negative * right-end-position: ** 119860 * left-end-position: ** 116617 * centisome-position: ** 27.213707...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-171 RXN-171] ==
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== Gene SJ08953 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** negative
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* ec-number:
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* right-end-position:
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** [http://enzyme.expasy.org/EC/1.14.11 ec-1.14.11]
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** 119860
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== Reaction formula ==
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* left-end-position:
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD1F-134]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CPD-482]][c] '''+''' 1 [[SUC]][c]
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** 116617
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[SJ14670]]
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** 27.213707   
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== Organism(s) associated with this gene  ==
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) associated ==
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* [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* Gene: [[SJ14672]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[GLYOXIII-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[HPPD]]
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* Gene: [[SJ07557]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[RXN-10815]]
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* Gene: [[SJ08018]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* Gene: [[SJ14675]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[PWY-7432]]
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== Pathway(s) ==
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** '''3''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-102]], gibberellin inactivation I (2β-hydroxylation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-102 PWY-102]
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* [[TYRFUMCAT-PWY]]
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** '''4''' reactions found over '''11''' reactions in the full pathway
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** '''2''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* [[PWY-1581]]
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[PWY-1422]]
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== External links  ==
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* LIGAND-RXN:
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* [[PWY-6318]]
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** [http://www.genome.jp/dbget-bin/www_bget?R06337 R06337]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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{{#set: direction=left-to-right}}
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{{#set: transcription-direction=negative}}
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{{#set: ec-number=ec-1.14.11}}
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{{#set: right-end-position=119860}}
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{{#set: nb gene associated=5}}
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{{#set: left-end-position=116617}}
−
{{#set: nb pathway associated=1}}
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{{#set: centisome-position=27.213707    }}
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{{#set: reconstruction category=orthology}}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: nb reaction associated=4}}
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{{#set: reconstruction comment=n.a}}
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{{#set: nb pathway associated=5}}
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{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus}}
 

Revision as of 09:28, 27 August 2019

Gene SJ08953

  • transcription-direction:
    • negative
  • right-end-position:
    • 119860
  • left-end-position:
    • 116617
  • centisome-position:
    • 27.213707

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7432
    • 3 reactions found over 2 reactions in the full pathway
  • TYRFUMCAT-PWY
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-1581
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-1422
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6318
    • 4 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-14901&oldid=34296"