Difference between revisions of "CPD-15036"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-RXN 3-OXOACYL-ACP-SYNTH-RXN] == * direction: ** left-to-right * common-name: **...")
(Created page with "Category:metabolite == Metabolite CPD-15036 == * common-name: ** 5-dehydro-4-deoxy-2-o-sulfo-d-glucuronate * smiles: ** c(=o)c(os([o-])(=o)=o)c(o)cc(=o)c(=o)[o-] * inchi-k...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-OXOACYL-ACP-SYNTH-RXN 3-OXOACYL-ACP-SYNTH-RXN] ==
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== Metabolite CPD-15036 ==
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** fatty acid synthase
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** 5-dehydro-4-deoxy-2-o-sulfo-d-glucuronate
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* ec-number:
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* smiles:
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** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
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** c(=o)c(os([o-])(=o)=o)c(o)cc(=o)c(=o)[o-]
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** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
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* inchi-key:
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** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
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** wfkzeqzrfipkif-ucorvyfpsa-l
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** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
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* molecular-weight:
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== Reaction formula ==
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** 254.168
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* 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Saturated-Fatty-Acyl-ACPs]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[B-KETOACYL-ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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== Reaction(s) known to consume the compound ==
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== Gene(s) associated with this reaction  ==
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== Reaction(s) known to produce the compound ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[RXN-14021]]
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* Gene: [[SJ06617]]
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== Reaction(s) of unknown directionality ==
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** Category: [[annotation]]
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{{#set: common-name=5-dehydro-4-deoxy-2-o-sulfo-d-glucuronate}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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{{#set: inchi-key=inchikey=wfkzeqzrfipkif-ucorvyfpsa-l}}
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* Gene: [[SJ04443]]
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{{#set: molecular-weight=254.168}}
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ06944]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ00320]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ04769]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ06616]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ19629]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ15983]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ17743]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ18059]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ00613]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ13014]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ10624]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ11672]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ03883]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ00005]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ15984]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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</div>
 
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== Pathway(s) ==
 
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* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated: [http://metacyc.org/META/NEW-IMAGE?object=FASYN-ELONG-PWY FASYN-ELONG-PWY]
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P23902 P23902]
 
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** [http://www.uniprot.org/uniprot/P0A6R0 P0A6R0]
 
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** [http://www.uniprot.org/uniprot/P49327 P49327]
 
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** [http://www.uniprot.org/uniprot/P43710 P43710]
 
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** [http://www.uniprot.org/uniprot/Q9HYR2 Q9HYR2]
 
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** [http://www.uniprot.org/uniprot/O67612 O67612]
 
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** [http://www.uniprot.org/uniprot/P20582 P20582]
 
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** [http://www.uniprot.org/uniprot/Q9JT63 Q9JT63]
 
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** [http://www.uniprot.org/uniprot/Q9JW56 Q9JW56]
 
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** [http://www.uniprot.org/uniprot/Q9PMZ6 Q9PMZ6]
 
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** [http://www.uniprot.org/uniprot/P43711 P43711]
 
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** [http://www.uniprot.org/uniprot/O25284 O25284]
 
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** [http://www.uniprot.org/uniprot/Q9JX65 Q9JX65]
 
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** [http://www.uniprot.org/uniprot/O34340 O34340]
 
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** [http://www.uniprot.org/uniprot/Q9PI63 Q9PI63]
 
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** [http://www.uniprot.org/uniprot/P0AAI5 P0AAI5]
 
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** [http://www.uniprot.org/uniprot/Q07510 Q07510]
 
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** [http://www.uniprot.org/uniprot/Q06097 Q06097]
 
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** [http://www.uniprot.org/uniprot/P41175 P41175]
 
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** [http://www.uniprot.org/uniprot/P31176 P31176]
 
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** [http://www.uniprot.org/uniprot/Q40027 Q40027]
 
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** [http://www.uniprot.org/uniprot/Q40028 Q40028]
 
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** [http://www.uniprot.org/uniprot/P73283 P73283]
 
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** [http://www.uniprot.org/uniprot/P0A953 P0A953]
 
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** [http://www.uniprot.org/uniprot/O64485 O64485]
 
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** [http://www.uniprot.org/uniprot/O65677 O65677]
 
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** [http://www.uniprot.org/uniprot/Q39310 Q39310]
 
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** [http://www.uniprot.org/uniprot/O23738 O23738]
 
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** [http://www.uniprot.org/uniprot/Q41134 Q41134]
 
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** [http://www.uniprot.org/uniprot/Q41135 Q41135]
 
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** [http://www.uniprot.org/uniprot/Q54208 Q54208]
 
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** [http://www.uniprot.org/uniprot/O54440 O54440]
 
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** [http://www.uniprot.org/uniprot/P55338 P55338]
 
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** [http://www.uniprot.org/uniprot/Q9RA31 Q9RA31]
 
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** [http://www.uniprot.org/uniprot/P12276 P12276]
 
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** [http://www.uniprot.org/uniprot/P12785 P12785]
 
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</div>
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=fatty acid synthase}}
 
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{{#set: ec-number=ec-2.3.1.85|ec-2.3.1.86|ec-2.3.1.41|ec-2.3.1.179}}
 
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{{#set: nb gene associated=17}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Latest revision as of 11:15, 18 March 2021

Metabolite CPD-15036

  • common-name:
    • 5-dehydro-4-deoxy-2-o-sulfo-d-glucuronate
  • smiles:
    • c(=o)c(os([o-])(=o)=o)c(o)cc(=o)c(=o)[o-]
  • inchi-key:
    • wfkzeqzrfipkif-ucorvyfpsa-l
  • molecular-weight:
    • 254.168

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-15036&oldid=138855"