Difference between revisions of "CPD-15424"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN] == * direction: ** r...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=biomass_rxn biomass_rxn] == * direction: ** left-to-right == Reaction formula == * 0.01 4-AMINO-B...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=biomass_rxn biomass_rxn] ==
 
* direction:
 
* direction:
−
** reversible
+
** left-to-right
−
* common-name:
 
−
** hydroxymethyl glutaryl-coa synthase
 
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.3.3.10 ec-2.3.3.10]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACETOACETYL-COA]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c]
+
* 0.01 [[4-AMINO-BUTYRATE]][c] '''+''' 0.1 [[ARG]][c] '''+''' 0.75 [[ASN]][c] '''+''' 19.3055 [[CIT]][c] '''+''' 0.3 [[CYS]][c] '''+''' 2.7615 [[GLC]][c] '''+''' 10.7 [[GLN]][c] '''+''' 18.85 [[GLT]][c] '''+''' 3.8 [[GLY]][c] '''+''' 0.123 [[GLYCERATE]][c] '''+''' 2.375 [[GLYCEROL]][c] '''+''' 0.029 [[GLYCOLLATE]][c] '''+''' 0.1 [[HIS]][c] '''+''' 0.2 [[ILE]][c] '''+''' 26.6 [[L-ALPHA-ALANINE]][c] '''+''' 12.5 [[L-ASPARTATE]][c] '''+''' 0.1 [[L-ORNITHINE]][c] '''+''' 0.3 [[LEU]][c] '''+''' 0.35 [[LYS]][c] '''+''' 331.4 [[MANNITOL]][c] '''+''' 0.3 [[MET]][c] '''+''' 0.35 [[PHE]][c] '''+''' 1.35 [[PRO]][c] '''+''' 3.35 [[SER]][c] '''+''' 0.878 [[SUC]][c] '''+''' 0.65 [[THR]][c] '''+''' 9.37 [[THREO-DS-ISO-CITRATE]][c] '''+''' 0.115 [[TRP]][c] '''+''' 0.125 [[TYR]][c] '''+''' 0.85 [[VAL]][c] '''=>''' 1 [[BIOMASS]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ06617]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ11593]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
−
** Category: [[orthology]]
 
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY66-367]], ketogenesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-367 PWY66-367]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7571]], ferrichrome A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7571 PWY-7571]
 
−
** '''1''' reactions found over '''5''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* category: [[manual]]; source: [[biomass_reaction]]; tool: [[curation]]; comment: forfba
−
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
{{#set: direction=left-to-right}}
−
* RHEA:
+
{{#set: nb gene associated=0}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10191 10191]
+
{{#set: nb pathway associated=0}}
−
* LIGAND-RXN:
+
{{#set: reconstruction category=manual}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01978 R01978]
+
{{#set: reconstruction tool=curation}}
−
* UNIPROT:
+
{{#set: reconstruction comment=forfba}}
−
** [http://www.uniprot.org/uniprot/P13704 P13704]
+
{{#set: reconstruction source=biomass_reaction}}
−
** [http://www.uniprot.org/uniprot/P22791 P22791]
 
−
** [http://www.uniprot.org/uniprot/P54870 P54870]
 
−
** [http://www.uniprot.org/uniprot/P54869 P54869]
 
−
** [http://www.uniprot.org/uniprot/O51626 O51626]
 
−
** [http://www.uniprot.org/uniprot/Q9CFA9 Q9CFA9]
 
−
** [http://www.uniprot.org/uniprot/P17425 P17425]
 
−
** [http://www.uniprot.org/uniprot/Q7LZE7 Q7LZE7]
 
−
** [http://www.uniprot.org/uniprot/Q01581 Q01581]
 
−
** [http://www.uniprot.org/uniprot/P54961 P54961]
 
−
** [http://www.uniprot.org/uniprot/P54839 P54839]
 
−
** [http://www.uniprot.org/uniprot/P54874 P54874]
 
−
** [http://www.uniprot.org/uniprot/P54868 P54868]
 
−
** [http://www.uniprot.org/uniprot/P54873 P54873]
 
−
** [http://www.uniprot.org/uniprot/P93773 P93773]
 
−
</div>
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=hydroxymethyl glutaryl-coa synthase}}
 
−
{{#set: ec-number=ec-2.3.3.10}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=6}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Revision as of 09:29, 27 August 2019

Reaction biomass_rxn

  • direction:
    • left-to-right

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-15424&oldid=35000"