Difference between revisions of "CPD-15657"
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(Created page with "Category:gene == Gene SJ21564 == * transcription-direction: ** positive * right-end-position: ** 372873 * left-end-position: ** 368358 * centisome-position: ** 61.890495...") |
(Created page with "Category:gene == Gene SJ19532 == * transcription-direction: ** negative * right-end-position: ** 74310 * left-end-position: ** 68801 * centisome-position: ** 30.500546...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ19532 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 74310 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 68801 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 30.500546 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[1.5.1.20-RXN]] |
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[UROGENIIISYN-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| − | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[ | + | * [[1CMET2-PWY]] |
| − | ** '''4''' reactions found over ''' | + | ** '''8''' reactions found over '''9''' reactions in the full pathway |
| − | * [[ | + | * [[PWY-3841]] |
| − | ** ''' | + | ** '''9''' reactions found over '''11''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-2201]] |
| − | ** ''' | + | ** '''9''' reactions found over '''12''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[CODH-PWY]] |
| − | {{#set: right-end-position= | + | ** '''4''' reactions found over '''9''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[PWY-5189]] |
| − | {{#set: centisome-position= | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
| + | * [[PWY-5188]] | ||
| + | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=negative}} | ||
| + | {{#set: right-end-position=74310}} | ||
| + | {{#set: left-end-position=68801}} | ||
| + | {{#set: centisome-position=30.500546 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=2}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=6}} |
Revision as of 14:23, 26 August 2019
Contents
Gene SJ19532
- transcription-direction:
- negative
- right-end-position:
- 74310
- left-end-position:
- 68801
- centisome-position:
- 30.500546
Organism(s) associated with this gene
Reaction(s) associated
- 1.5.1.20-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- UROGENIIISYN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- 1CMET2-PWY
- 8 reactions found over 9 reactions in the full pathway
- PWY-3841
- 9 reactions found over 11 reactions in the full pathway
- PWY-2201
- 9 reactions found over 12 reactions in the full pathway
- CODH-PWY
- 4 reactions found over 9 reactions in the full pathway
- PWY-5189
- 3 reactions found over 4 reactions in the full pathway
- PWY-5188
- 6 reactions found over 6 reactions in the full pathway
