Difference between revisions of "CPD-15690"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5468 RXN-5468] == * direction: ** left-to-right * common-name: ** dolichyl-p-man:man7glcnac2-pp...")
(Created page with "Category:gene == Gene SJ08226 == * transcription-direction: ** negative * right-end-position: ** 28845 * left-end-position: ** 6355 * centisome-position: ** 11.28013 =...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5468 RXN-5468] ==
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== Gene SJ08226 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** negative
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* common-name:
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* right-end-position:
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** dolichyl-p-man:man7glcnac2-pp-dolichol α-1,6-mannosyltransferase
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** 28845
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* ec-number:
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* left-end-position:
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** [http://enzyme.expasy.org/EC/2.4.1.260 ec-2.4.1.260]
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** 6355
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== Reaction formula ==
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* centisome-position:
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* 1 [[CPD-171]][c] '''+''' 1 [[CPD-5166]][c] '''=>''' 1 [[CPD-5167]][c] '''+''' 1 [[DOLICHOLP]][c] '''+''' 1 [[PROTON]][c]
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** 11.28013   
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[SJ11524]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[2.7.11.7-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[SJ11915]]
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* [[ATPASE-RXN]]
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ11523]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s)  ==
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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* [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]], protein N-glycosylation initial phase (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]
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** Category: [[annotation]]
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** '''16''' reactions found over '''19''' reactions in the full pathway
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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* [[PROTEIN-KINASE-RXN]]
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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** Category: [[annotation]]
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* [[RXN-12195]]
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* LIGAND-RXN:
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** Category: [[annotation]]
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** [http://www.genome.jp/dbget-bin/www_bget?R06260 R06260]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* RHEA:
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* [[RXN-12196]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=29538 29538]
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** Category: [[annotation]]
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{{#set: direction=left-to-right}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: common-name=dolichyl-p-man:man7glcnac2-pp-dolichol &alpha;-1,6-mannosyltransferase}}
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* [[RXN0-5462]]
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{{#set: ec-number=ec-2.4.1.260}}
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** Category: [[annotation]]
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{{#set: nb gene associated=3}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: nb pathway associated=1}}
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</div>
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{{#set: reconstruction category=orthology|annotation}}
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== Pathway(s) associated ==
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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* [[PWY-7210]]
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{{#set: reconstruction comment=n.a}}
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** '''8''' reactions found over '''8''' reactions in the full pathway
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
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* [[PWY-7198]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7184]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6545]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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{{#set: transcription-direction=negative}}
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{{#set: right-end-position=28845}}
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{{#set: left-end-position=6355}}
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{{#set: centisome-position=11.28013    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=7}}
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{{#set: nb pathway associated=4}}

Revision as of 09:28, 27 August 2019

Gene SJ08226

  • transcription-direction:
    • negative
  • right-end-position:
    • 28845
  • left-end-position:
    • 6355
  • centisome-position:
    • 11.28013

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway




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