Difference between revisions of "CPD-16016"
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(Created page with "Category:gene == Gene SJ02978 == == Organism(s) associated with this gene == * S.japonica_carotenoid_curated == Reaction(s) associated == * RXN-8443 ** Category:...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.7.4-RXN 1.3.7.4-RXN] == * direction: ** left-to-right * common-name: ** phytochromobilin:ferred...") |
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| Line 1: | Line 1: | ||
| − | [[Category: | + | [[Category:reaction]] |
| − | == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.3.7.4-RXN 1.3.7.4-RXN] == |
| − | == | + | * direction: |
| − | * [[ | + | ** left-to-right |
| − | == | + | * common-name: |
| − | * [[ | + | ** phytochromobilin:ferredoxin oxidoreductase |
| + | * ec-number: | ||
| + | ** [http://enzyme.expasy.org/EC/1.3.7.4 ec-1.3.7.4] | ||
| + | == Reaction formula == | ||
| + | * 1 [[BILIVERDINE]][c] '''+''' 2 [[PROTON]][c] '''+''' 2 [[Reduced-ferredoxins]][c] '''=>''' 1 [[3Z-PHYTOCHROMOBILIN]][c] '''+''' 2 [[Oxidized-ferredoxins]][c] | ||
| + | == Gene(s) associated with this reaction == | ||
| + | * Gene: [[SJ04581]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| − | *** | + | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
| − | *** | + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a |
| − | == Pathway(s) | + | == Pathway(s) == |
| − | * [[PWY- | + | * [[PWY-7170]], phytochromobilin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7170 PWY-7170] |
| − | ** ''' | + | ** '''2''' reactions found over '''3''' reactions in the full pathway |
| − | {{#set: | + | == Reconstruction information == |
| − | {{#set: nb | + | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | == External links == | ||
| + | * RHEA: | ||
| + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16379 16379] | ||
| + | * LIGAND-RXN: | ||
| + | ** [http://www.genome.jp/dbget-bin/www_bget?R03678 R03678] | ||
| + | {{#set: direction=left-to-right}} | ||
| + | {{#set: common-name=phytochromobilin:ferredoxin oxidoreductase}} | ||
| + | {{#set: ec-number=ec-1.3.7.4}} | ||
| + | {{#set: nb gene associated=1}} | ||
{{#set: nb pathway associated=1}} | {{#set: nb pathway associated=1}} | ||
| + | {{#set: reconstruction category=annotation|orthology}} | ||
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
| + | {{#set: reconstruction comment=n.a}} | ||
| + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome|output_pantograph_arabidopsis_thaliana}} | ||
Revision as of 09:28, 27 August 2019
Contents
Reaction 1.3.7.4-RXN
- direction:
- left-to-right
- common-name:
- phytochromobilin:ferredoxin oxidoreductase
- ec-number:
Reaction formula
- 1 BILIVERDINE[c] + 2 PROTON[c] + 2 Reduced-ferredoxins[c] => 1 3Z-PHYTOCHROMOBILIN[c] + 2 Oxidized-ferredoxins[c]
Gene(s) associated with this reaction
- Gene: SJ04581
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_arabidopsis_thaliana, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7170, phytochromobilin biosynthesis: PWY-7170
- 2 reactions found over 3 reactions in the full pathway
Reconstruction information
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
External links
