Difference between revisions of "CPD-173"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SALICYLATE-1-MONOOXYGENASE-RXN SALICYLATE-1-MONOOXYGENASE-RXN] == * direction: ** left-to-right * c...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] == * direction: ** left-to-right * common-name: ** 2c-methyl-d-erythritol 2,4-cy...") |
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| Line 1: | Line 1: | ||
[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-302 RXN0-302] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
* common-name: | * common-name: | ||
| − | ** | + | ** 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase |
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/4.6.1.12 ec-4.6.1.12] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''=>''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[CMP]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ21110]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: | + | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a |
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| − | * [[PWY- | + | * [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY] |
| − | ** ''' | + | ** '''9''' reactions found over '''9''' reactions in the full pathway |
| + | * [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560] | ||
| + | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23865 23865] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
| − | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R05637 R05637] |
| − | |||
| − | |||
| − | |||
| − | |||
{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: common-name= | + | {{#set: common-name=2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase}} |
| − | {{#set: ec-number=ec- | + | {{#set: ec-number=ec-4.6.1.12}} |
{{#set: nb gene associated=1}} | {{#set: nb gene associated=1}} | ||
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=2}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: reconstruction category=annotation|orthology}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction tool=pantograph|pathwaytools}} |
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}} |
Revision as of 09:29, 27 August 2019
Contents
Reaction RXN0-302
- direction:
- left-to-right
- common-name:
- 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase
- ec-number:
Reaction formula
- 1 2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET[c] => 1 2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE[c] + 1 CMP[c]
Gene(s) associated with this reaction
- Gene: SJ21110
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_nannochloropsis_salina, Tool: pantograph, Assignment: n.a, Comment: n.a
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
- 9 reactions found over 9 reactions in the full pathway
- PWY-7560, methylerythritol phosphate pathway II: PWY-7560
- 9 reactions found over 9 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
External links
