Difference between revisions of "CPD-17757"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=LEUCINE--TRNA-LIGASE-RXN LEUCINE--TRNA-LIGASE-RXN] == * direction: ** left-to-right * common-name:...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1441 RXN0-1441] == * direction: ** left-to-right * common-name: ** adp-ribose pyrophosphatase...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=LEUCINE--TRNA-LIGASE-RXN LEUCINE--TRNA-LIGASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1441 RXN0-1441] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** leucine-trna ligase
+
** adp-ribose pyrophosphatase
 +
** adp-ribose diphosphatase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/6.1.1.4 ec-6.1.1.4]
+
** [http://enzyme.expasy.org/EC/3.6.1.53 ec-3.6.1.53]
 +
** [http://enzyme.expasy.org/EC/3.6.1.13 ec-3.6.1.13]
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[LEU]][c] '''+''' 1 [[LEU-tRNAs]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Charged-LEU-tRNAs]][c] '''+''' 1 [[PPI]][c]
+
* 1 [[ADENOSINE_DIPHOSPHATE_RIBOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-15317]][c] '''+''' 2 [[PROTON]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ12222]]
+
* Gene: [[SJ00357]]
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ06120]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12219]]
+
* Gene: [[SJ08998]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ12220]]
+
* Gene: [[SJ07747]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
** Category: [[orthology]]
+
* Gene: [[SJ13701]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[SJ16362]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 
−
** '''21''' reactions found over '''21''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
== External links  ==
 
== External links  ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11689 11689]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10413 10413]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03657 R03657]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01054 R01054]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O27552 O27552]
 
−
** [http://www.uniprot.org/uniprot/P56457 P56457]
 
−
** [http://www.uniprot.org/uniprot/O51267 O51267]
 
−
** [http://www.uniprot.org/uniprot/O83595 O83595]
 
−
** [http://www.uniprot.org/uniprot/O84211 O84211]
 
−
** [http://www.uniprot.org/uniprot/Q9Z930 Q9Z930]
 
−
** [http://www.uniprot.org/uniprot/P47508 P47508]
 
−
** [http://www.uniprot.org/uniprot/P36430 P36430]
 
−
** [http://www.uniprot.org/uniprot/O66680 O66680]
 
−
** [http://www.uniprot.org/uniprot/O67646 O67646]
 
−
** [http://www.uniprot.org/uniprot/Q9ZDB1 Q9ZDB1]
 
−
** [http://www.uniprot.org/uniprot/Q9WY15 Q9WY15]
 
−
** [http://www.uniprot.org/uniprot/Q9PNK3 Q9PNK3]
 
−
** [http://www.uniprot.org/uniprot/Q9JW39 Q9JW39]
 
−
** [http://www.uniprot.org/uniprot/Q9ZJ63 Q9ZJ63]
 
−
** [http://www.uniprot.org/uniprot/Q9JXT2 Q9JXT2]
 
−
** [http://www.uniprot.org/uniprot/P43827 P43827]
 
−
** [http://www.uniprot.org/uniprot/O58698 O58698]
 
−
** [http://www.uniprot.org/uniprot/Q9CHB6 Q9CHB6]
 
−
** [http://www.uniprot.org/uniprot/P26637 P26637]
 
−
** [http://www.uniprot.org/uniprot/P75398 P75398]
 
−
** [http://www.uniprot.org/uniprot/P73274 P73274]
 
−
** [http://www.uniprot.org/uniprot/Q48955 Q48955]
 
−
** [http://www.uniprot.org/uniprot/Q48964 Q48964]
 
−
** [http://www.uniprot.org/uniprot/Q49051 Q49051]
 
−
** [http://www.uniprot.org/uniprot/P11325 P11325]
 
−
** [http://www.uniprot.org/uniprot/P07813 P07813]
 
−
** [http://www.uniprot.org/uniprot/P10857 P10857]
 
−
** [http://www.uniprot.org/uniprot/P15181 P15181]
 
−
** [http://www.uniprot.org/uniprot/Q50192 Q50192]
 
−
</div>
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=leucine-trna ligase}}
+
{{#set: common-name=adp-ribose diphosphatase|adp-ribose pyrophosphatase}}
−
{{#set: ec-number=ec-6.1.1.4}}
+
{{#set: ec-number=ec-3.6.1.53|ec-3.6.1.13}}
−
{{#set: nb gene associated=4}}
+
{{#set: nb gene associated=5}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=0}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools|pantograph}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 14:25, 26 August 2019

Reaction RXN0-1441

  • direction:
    • left-to-right
  • common-name:
    • adp-ribose pyrophosphatase
    • adp-ribose diphosphatase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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