Difference between revisions of "CPD-18238"
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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARACHIDONATE-15-LIPOXYGENASE-RXN ARACHIDONATE-15-LIPOXYGENASE-RXN] == * direction: ** left-to-right...") |
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2023 RXN0-2023] == * direction: ** left-to-right * common-name: ** trna-specific 2-thiouridyla...") |
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[[Category:reaction]] | [[Category:reaction]] | ||
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2023 RXN0-2023] == |
* direction: | * direction: | ||
** left-to-right | ** left-to-right | ||
| + | * common-name: | ||
| + | ** trna-specific 2-thiouridylase | ||
* ec-number: | * ec-number: | ||
| − | ** [http://enzyme.expasy.org/EC/1.13. | + | ** [http://enzyme.expasy.org/EC/2.8.1.13 ec-2.8.1.13] |
== Reaction formula == | == Reaction formula == | ||
| − | * 1 [[ | + | * 1 [[ATP]][c] '''+''' 1 [[Donor-H2]][c] '''+''' 1 [[TusE-S-sulfanylcysteine]][c] '''+''' 1 [[tRNA-uridine34]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[Acceptor]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[TusE-L-cysteine]][c] '''+''' 1 [[tRNA-2-thiouridine34]][c] |
== Gene(s) associated with this reaction == | == Gene(s) associated with this reaction == | ||
| − | * Gene: [[ | + | * Gene: [[SJ13939]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| − | * Gene: [[ | + | * Gene: [[SJ00619]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | ||
== Pathway(s) == | == Pathway(s) == | ||
| + | * [[PWY-7892]], tRNA-uridine 2-thiolation (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7892 PWY-7892] | ||
| + | ** '''3''' reactions found over '''8''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
| + | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
== External links == | == External links == | ||
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{{#set: direction=left-to-right}} | {{#set: direction=left-to-right}} | ||
| − | {{#set: ec-number=ec-1.13 | + | {{#set: common-name=trna-specific 2-thiouridylase}} |
| − | {{#set: nb gene associated= | + | {{#set: ec-number=ec-2.8.1.13}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb gene associated=2}} |
| − | {{#set: reconstruction category=annotation}} | + | {{#set: nb pathway associated=1}} |
| − | {{#set: reconstruction tool=pathwaytools}} | + | {{#set: reconstruction category=orthology|annotation}} |
| + | {{#set: reconstruction tool=pantograph|pathwaytools}} | ||
{{#set: reconstruction comment=n.a}} | {{#set: reconstruction comment=n.a}} | ||
| − | {{#set: reconstruction source=saccharina_japonica_genome}} | + | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}} |
Revision as of 14:25, 26 August 2019
Contents
Reaction RXN0-2023
- direction:
- left-to-right
- common-name:
- trna-specific 2-thiouridylase
- ec-number:
Reaction formula
- 1 ATP[c] + 1 Donor-H2[c] + 1 TusE-S-sulfanylcysteine[c] + 1 tRNA-uridine34[c] => 1 AMP[c] + 1 Acceptor[c] + 1 PPI[c] + 1 PROTON[c] + 1 TusE-L-cysteine[c] + 1 tRNA-2-thiouridine34[c]
Gene(s) associated with this reaction
- Gene: SJ13939
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: annotation
- Gene: SJ00619
- Category: annotation
- Source: saccharina_japonica_genome, Tool: pathwaytools, Assignment: ec-number, Comment: n.a
- Category: orthology
- Source: output_pantograph_ectocarpus_siliculosus, Tool: pantograph, Assignment: n.a, Comment: n.a
- Category: annotation
Pathway(s)
- PWY-7892, tRNA-uridine 2-thiolation (bacteria): PWY-7892
- 3 reactions found over 8 reactions in the full pathway
Reconstruction information
- category: orthology; source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- category: annotation; source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
