Difference between revisions of "CPD-1828"

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(Created page with "Category:gene == Gene SJ08289 == == Organism(s) associated with this gene == * S.japonica_carotenoid_curated == Reaction(s) associated == * PNKIN-RXN ** Category:...")
 
(Created page with "Category:gene == Gene SJ08179 == * transcription-direction: ** negative * right-end-position: ** 442276 * left-end-position: ** 434592 * centisome-position: ** 97.71844...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ08289 ==
+
== Gene SJ08179 ==
 +
* transcription-direction:
 +
** negative
 +
* right-end-position:
 +
** 442276
 +
* left-end-position:
 +
** 434592
 +
* centisome-position:
 +
** 97.71844   
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[PNKIN-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[G6PI]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[PYRAMKIN-RXN]]
+
* [[GLUCOSE-6-PHOSPHATE-1-EPIMERASE-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[PYRIDOXKIN-RXN]]
+
* [[PGIA]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PGIAh]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PGIB]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PGIBh]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[PGLUCISOM-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PLPSAL-PWY]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
* [[PWY-6142]]
−
* [[PWY-7204]]
+
** '''10''' reactions found over '''13''' reactions in the full pathway
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
* [[SUCSYN-PWY]]
−
* [[PWY-7282]]
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
* [[PWY-5514]]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7385]]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-3801]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-621]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[P122-PWY]]
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-7347]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[P341-PWY]]
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY66-399]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5384]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5659]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[RUMP-PWY]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6981]]
 +
** '''4''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6992]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[UDPNAGSYN-PWY]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[P124-PWY]]
 +
** '''12''' reactions found over '''15''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]]
 +
** '''12''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-622]]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5054]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7238]]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=442276}}
 +
{{#set: left-end-position=434592}}
 +
{{#set: centisome-position=97.71844    }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=3}}
+
{{#set: nb reaction associated=7}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=23}}

Revision as of 14:23, 26 August 2019

Gene SJ08179

  • transcription-direction:
    • negative
  • right-end-position:
    • 442276
  • left-end-position:
    • 434592
  • centisome-position:
    • 97.71844

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • SUCSYN-PWY
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-5514
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7385
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-3801
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-621
    • 3 reactions found over 4 reactions in the full pathway
  • P122-PWY
    • 16 reactions found over 18 reactions in the full pathway
  • PWY-7347
    • 1 reactions found over 3 reactions in the full pathway
  • P341-PWY
    • 6 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-5384
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5659
    • 3 reactions found over 4 reactions in the full pathway
  • RUMP-PWY
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6981
    • 4 reactions found over 3 reactions in the full pathway
  • PWY-6992
    • 4 reactions found over 5 reactions in the full pathway
  • UDPNAGSYN-PWY
    • 4 reactions found over 5 reactions in the full pathway
  • P124-PWY
    • 12 reactions found over 15 reactions in the full pathway
  • GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • PWY-622
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-5054
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7238
    • 5 reactions found over 8 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-1828&oldid=19679"