Difference between revisions of "CPD-18490"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2PGADEHYDRAT-RXN 2PGADEHYDRAT-RXN] == * direction: ** reversible * common-name: ** enolase * ec-num...")
 
(Created page with "Category:metabolite == Metabolite CPD-18490 == * common-name: ** (2e,9z,12z,15z,18z)-tetracosa-2,9,12,15,18-pentaenoyl-coa * smiles: ** cccccc=ccc=ccc=ccc=ccccccc=cc(sccnc...")
 
(9 intermediate revisions by 5 users not shown)
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2PGADEHYDRAT-RXN 2PGADEHYDRAT-RXN] ==
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== Metabolite CPD-18490 ==
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* direction:
 
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** reversible
 
 
* common-name:
 
* common-name:
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** enolase
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** (2e,9z,12z,15z,18z)-tetracosa-2,9,12,15,18-pentaenoyl-coa
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* ec-number:
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* smiles:
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** [http://enzyme.expasy.org/EC/4.2.1.11 ec-4.2.1.11]
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** cccccc=ccc=ccc=ccc=ccccccc=cc(sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-])=o
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== Reaction formula ==
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* inchi-key:
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* 1 [[2-PG]][c] '''<=>''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[WATER]][c]
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** avrcofdawhwkmb-mnthwfihsa-j
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== Gene(s) associated with this reaction  ==
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* molecular-weight:
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* Gene: [[SJ08386]]
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** 1104.05
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** Category: [[annotation]]
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== Reaction(s) known to consume the compound ==
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Reaction(s) known to produce the compound ==
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** Category: [[orthology]]
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* [[RXN-17110]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Reaction(s) of unknown directionality ==
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: common-name=(2e,9z,12z,15z,18z)-tetracosa-2,9,12,15,18-pentaenoyl-coa}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: inchi-key=inchikey=avrcofdawhwkmb-mnthwfihsa-j}}
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* Gene: [[SJ17529]]
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{{#set: molecular-weight=1104.05}}
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ13450]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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== Pathway(s)  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 
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** '''12''' reactions found over '''13''' reactions in the full pathway
 
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 
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** '''12''' reactions found over '''15''' reactions in the full pathway
 
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* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=PWY-2221 PWY-2221]
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
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* [[NPGLUCAT-PWY]], Entner-Doudoroff pathway II (non-phosphorylative): [http://metacyc.org/META/NEW-IMAGE?object=NPGLUCAT-PWY NPGLUCAT-PWY]
 
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** '''4''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-1622]], formaldehyde assimilation I (serine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1622 PWY-1622]
 
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** '''6''' reactions found over '''13''' reactions in the full pathway
 
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* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 
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** '''16''' reactions found over '''18''' reactions in the full pathway
 
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5484 PWY-5484]
 
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** '''10''' reactions found over '''11''' reactions in the full pathway
 
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* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
 
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** '''6''' reactions found over '''10''' reactions in the full pathway
 
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
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* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 
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** '''10''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-1042]], glycolysis IV (plant cytosol): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1042 PWY-1042]
 
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** '''9''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 
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** '''10''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-7003]], glycerol degradation to butanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7003 PWY-7003]
 
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** '''8''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-6886]], 1-butanol autotrophic biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6886 PWY-6886]
 
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** '''8''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
 
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** '''10''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7124]], ethylene biosynthesis V (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7124 PWY-7124]
 
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** '''8''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
 
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** '''10''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-7218]], photosynthetic 3-hydroxybutanoate biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7218 PWY-7218]
 
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** '''7''' reactions found over '''4''' reactions in the full pathway
 
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</div>
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10167 10167]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00658 R00658]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P04764 P04764]
 
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** [http://www.uniprot.org/uniprot/P07322 P07322]
 
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** [http://www.uniprot.org/uniprot/P07323 P07323]
 
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** [http://www.uniprot.org/uniprot/P06733 P06733]
 
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** [http://www.uniprot.org/uniprot/P19140 P19140]
 
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** [http://www.uniprot.org/uniprot/P25704 P25704]
 
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** [http://www.uniprot.org/uniprot/P30575 P30575]
 
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** [http://www.uniprot.org/uniprot/P33675 P33675]
 
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** [http://www.uniprot.org/uniprot/P47647 P47647]
 
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** [http://www.uniprot.org/uniprot/Q9JU46 Q9JU46]
 
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** [http://www.uniprot.org/uniprot/P37869 P37869]
 
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** [http://www.uniprot.org/uniprot/Q9URB2 Q9URB2]
 
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** [http://www.uniprot.org/uniprot/Q9CIT0 Q9CIT0]
 
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** [http://www.uniprot.org/uniprot/Q9CHS7 Q9CHS7]
 
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** [http://www.uniprot.org/uniprot/P43806 P43806]
 
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** [http://www.uniprot.org/uniprot/P42448 P42448]
 
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** [http://www.uniprot.org/uniprot/P42848 P42848]
 
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** [http://www.uniprot.org/uniprot/Q05524 Q05524]
 
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** [http://www.uniprot.org/uniprot/P42897 P42897]
 
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** [http://www.uniprot.org/uniprot/P40370 P40370]
 
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** [http://www.uniprot.org/uniprot/P51913 P51913]
 
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** [http://www.uniprot.org/uniprot/P26300 P26300]
 
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** [http://www.uniprot.org/uniprot/Q42887 Q42887]
 
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** [http://www.uniprot.org/uniprot/P25696 P25696]
 
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** [http://www.uniprot.org/uniprot/P00924 P00924]
 
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** [http://www.uniprot.org/uniprot/P00925 P00925]
 
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** [http://www.uniprot.org/uniprot/P0A6P9 P0A6P9]
 
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** [http://www.uniprot.org/uniprot/P29201 P29201]
 
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** [http://www.uniprot.org/uniprot/P09104 P09104]
 
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** [http://www.uniprot.org/uniprot/P21550 P21550]
 
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** [http://www.uniprot.org/uniprot/P08734 P08734]
 
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** [http://www.uniprot.org/uniprot/Q7M4Y6 Q7M4Y6]
 
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** [http://www.uniprot.org/uniprot/P15429 P15429]
 
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** [http://www.uniprot.org/uniprot/P13929 P13929]
 
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** [http://www.uniprot.org/uniprot/P15007 P15007]
 
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** [http://www.uniprot.org/uniprot/P17182 P17182]
 
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** [http://www.uniprot.org/uniprot/P17183 P17183]
 
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** [http://www.uniprot.org/uniprot/P26301 P26301]
 
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** [http://www.uniprot.org/uniprot/P31683 P31683]
 
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** [http://www.uniprot.org/uniprot/Q54274 Q54274]
 
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** [http://www.uniprot.org/uniprot/P42896 P42896]
 
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** [http://www.uniprot.org/uniprot/Q27727 Q27727]
 
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** [http://www.uniprot.org/uniprot/Q9UWJ5 Q9UWJ5]
 
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** [http://www.uniprot.org/uniprot/P48285 P48285]
 
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** [http://www.uniprot.org/uniprot/Q12007 Q12007]
 
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** [http://www.uniprot.org/uniprot/P42222 P42222]
 
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** [http://www.uniprot.org/uniprot/P75189 P75189]
 
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** [http://www.uniprot.org/uniprot/P77972 P77972]
 
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** [http://www.uniprot.org/uniprot/Q49059 Q49059]
 
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** [http://www.uniprot.org/uniprot/P42895 P42895]
 
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** [http://www.uniprot.org/uniprot/Q42971 Q42971]
 
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** [http://www.uniprot.org/uniprot/Q43130 Q43130]
 
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** [http://www.uniprot.org/uniprot/O69174 O69174]
 
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</div>
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=enolase}}
 
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{{#set: ec-number=ec-4.2.1.11}}
 
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{{#set: nb gene associated=3}}
 
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{{#set: nb pathway associated=19}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pathwaytools|pantograph}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|output_pantograph_arabidopsis_thaliana|output_pantograph_nannochloropsis_salina|saccharina_japonica_genome}}
 

Latest revision as of 11:17, 18 March 2021

Metabolite CPD-18490

  • common-name:
    • (2e,9z,12z,15z,18z)-tetracosa-2,9,12,15,18-pentaenoyl-coa
  • smiles:
    • cccccc=ccc=ccc=ccc=ccccccc=cc(sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-])=o
  • inchi-key:
    • avrcofdawhwkmb-mnthwfihsa-j
  • molecular-weight:
    • 1104.05

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-18490&oldid=139378"