Difference between revisions of "CPD-18494"

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(Created page with "Category:gene == Gene SJ21967 == * transcription-direction: ** negative * right-end-position: ** 192992 * left-end-position: ** 185854 * centisome-position: ** 31.658325...")
(Created page with "Category:metabolite == Metabolite CPD-18494 == * common-name: ** 3-oxo-(6z,9z,12z,15z,18z)-tetracosapentaenoyl-coa * smiles: ** cccccc=ccc=ccc=ccc=ccc=cccc(=o)cc(sccnc(=o)...")
 
(8 intermediate revisions by 3 users not shown)
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[[Category:gene]]
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[[Category:metabolite]]
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== Gene SJ21967 ==
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== Metabolite CPD-18494 ==
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* transcription-direction:
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* common-name:
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** negative
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** 3-oxo-(6z,9z,12z,15z,18z)-tetracosapentaenoyl-coa
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* right-end-position:
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* smiles:
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** 192992
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** cccccc=ccc=ccc=ccc=ccc=cccc(=o)cc(sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-])=o
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* left-end-position:
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* inchi-key:
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** 185854
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** uiagujimvqpsdp-qojzhlsosa-j
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* centisome-position:
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* molecular-weight:
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** 31.658325   
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** 1118.034
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to consume the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[RXN-17116]]
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== Reaction(s) associated ==
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== Reaction(s) known to produce the compound ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) of unknown directionality ==
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* [[ADENYL-KIN-RXN]]
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{{#set: common-name=3-oxo-(6z,9z,12z,15z,18z)-tetracosapentaenoyl-coa}}
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** Category: [[orthology]]
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{{#set: inchi-key=inchikey=uiagujimvqpsdp-qojzhlsosa-j}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: molecular-weight=1118.034}}
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* [[ATCM]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* [[ATDCM]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* [[CDPKIN-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[DADPKIN-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[DCDPKIN-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[DGDPKIN-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[DTDPKIN-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[DUDPKIN-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[GDPKIN-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[NUCLEOSIDE-DIP-KIN-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[PROTEIN-KINASE-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-11832]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-12002]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-14120]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-14228]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-7913]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[UDPKIN-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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</div>
 
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== Pathway(s) associated ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[PWY-7219]]
 
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** '''4''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-7205]]
 
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** '''2''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-7220]]
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7227]]
 
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** '''2''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-7224]]
 
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** '''3''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-6545]]
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7197]]
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY0-166]]
 
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** '''14''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-7210]]
 
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** '''8''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7198]]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7184]]
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7222]]
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7226]]
 
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** '''2''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-7187]]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PPGPPMET-PWY]]
 
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** '''5''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-7221]]
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7176]]
 
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** '''3''' reactions found over '''3''' reactions in the full pathway
 
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</div>
 
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{{#set: transcription-direction=negative}}
 
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{{#set: right-end-position=192992}}
 
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{{#set: left-end-position=185854}}
 
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{{#set: centisome-position=31.658325    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
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{{#set: nb reaction associated=18}}
 
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{{#set: nb pathway associated=17}}
 

Latest revision as of 11:11, 18 March 2021

Metabolite CPD-18494

  • common-name:
    • 3-oxo-(6z,9z,12z,15z,18z)-tetracosapentaenoyl-coa
  • smiles:
    • cccccc=ccc=ccc=ccc=ccc=cccc(=o)cc(sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-])=o
  • inchi-key:
    • uiagujimvqpsdp-qojzhlsosa-j
  • molecular-weight:
    • 1118.034

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-18494&oldid=136724"