Difference between revisions of "CPD-19487"

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(Created page with "Category:gene == Gene SJ06470 == * transcription-direction: ** negative * right-end-position: ** 97361 * left-end-position: ** 62186 * centisome-position: ** 13.077831...")
(Created page with "Category:metabolite == Metabolite CPD-19487 == * common-name: ** 3-isopropyl-10-(methylthio)-2-oxodecanoate * smiles: ** cscccccccc(c(=o)c(=o)[o-])c(=o)[o-] * inchi-key: *...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:gene]]
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[[Category:metabolite]]
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== Gene SJ06470 ==
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== Metabolite CPD-19487 ==
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* transcription-direction:
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* common-name:
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** negative
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** 3-isopropyl-10-(methylthio)-2-oxodecanoate
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* right-end-position:
+
* smiles:
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** 97361
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** cscccccccc(c(=o)c(=o)[o-])c(=o)[o-]
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* left-end-position:
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* inchi-key:
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** 62186
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** ukhzbtwecwuvph-uhfffaoysa-l
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* centisome-position:
+
* molecular-weight:
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** 13.077831   
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** 274.331
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to consume the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[RXN-18200]]
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== Reaction(s) associated ==
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== Reaction(s) known to produce the compound ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[RXN-18200]]
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* [[ACYLCOADEHYDROG-RXN]]
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== Reaction(s) of unknown directionality ==
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** Category: [[annotation]]
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{{#set: common-name=3-isopropyl-10-(methylthio)-2-oxodecanoate}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: inchi-key=inchikey=ukhzbtwecwuvph-uhfffaoysa-l}}
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* [[ALCOHOL-DEHYDROGENASE-NADP+-RXN]]
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{{#set: molecular-weight=274.331}}
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[ALCOHOL-DEHYDROGENASE-NADPORNOP+-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[ALDEHYDE-DEHYDROGENASE-NADORNOP+-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[ALDEHYDE-DEHYDROGENASE-NADP+-RXN]]
 
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** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[ALDHDEHYDROG-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[BENZALDEHYDE-DEHYDROGENASE-NAD+-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN]]
 
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** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[R222-RXN]]
 
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** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-10089]]
 
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** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-10715]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-10717]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-10780]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-10912]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-10917]]
 
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** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-12484]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-14023]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-14209]]
 
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** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-14224]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-14225]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-14280]]
 
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** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-16653]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-16654]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-16655]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-16656]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-17808]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-3443]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-37]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-4142]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-5581]]
 
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** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-6002]]
 
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** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-6382]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-8582]]
 
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** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-8583]]
 
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** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9758]]
 
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** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-9910]]
 
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** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN66-3]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN66-472]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN66-476]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN66-479]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN6666-5]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
</div>
 
−
== Pathway(s) associated ==
 
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* [[FAO-PWY]]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7269]]
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6766]]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-6763]]
 
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** '''1''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY-6444]]
 
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** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[TOLUENE-DEG-CATECHOL-PWY]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-1501]]
 
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** '''1''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6446]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[P221-PWY]]
 
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** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6181]]
 
−
** '''1''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-6307]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6313]]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6342]]
 
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** '''8''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-7178]]
 
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** '''1''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-2221]]
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-0]]
 
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** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-2724]]
 
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** '''2''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-2501]]
 
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** '''1''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-3162]]
 
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** '''2''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-3641]]
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-3981]]
 
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-5760]]
 
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-5429]]
 
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** '''1''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-5428]]
 
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** '''1''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-6054]]
 
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** '''1''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-6055]]
 
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** '''1''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-6104]]
 
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** '''1''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-7387]]
 
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** '''1''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY66-21]]
 
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** '''3''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY66-162]]
 
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** '''3''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY66-161]]
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY66-387]]
 
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** '''4''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY66-388]]
 
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** '''2''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY66-389]]
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY6666-2]]
 
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** '''3''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-7431]]
 
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** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
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{{#set: right-end-position=97361}}
 
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{{#set: left-end-position=62186}}
 
−
{{#set: centisome-position=13.077831    }}
 
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
−
{{#set: nb reaction associated=41}}
 
−
{{#set: nb pathway associated=36}}
 

Latest revision as of 11:12, 18 March 2021

Metabolite CPD-19487

  • common-name:
    • 3-isopropyl-10-(methylthio)-2-oxodecanoate
  • smiles:
    • cscccccccc(c(=o)c(=o)[o-])c(=o)[o-]
  • inchi-key:
    • ukhzbtwecwuvph-uhfffaoysa-l
  • molecular-weight:
    • 274.331

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-19487&oldid=137179"