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| | [[Category:reaction]] | | [[Category:reaction]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ASPCARBTRANS-RXN ASPCARBTRANS-RXN] == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACECOATRANS-RXN-CPD-10280/ACET//TETRACOSANOATE/ACETYL-COA.42. ACECOATRANS-RXN-CPD-10280/ACET//TETRACOSANOATE/ACETYL-COA.42.] == |
| | * direction: | | * direction: |
| − | ** reversible | + | ** left-to-right |
| − | * common-name:
| |
| − | ** aspartate transcarbamylase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/2.1.3.2 ec-2.1.3.2]
| |
| | == Reaction formula == | | == Reaction formula == |
| − | * 1 [[CARBAMOYL-P]][c] '''+''' 1 [[L-ASPARTATE]][c] '''<=>''' 1 [[CARBAMYUL-L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c] | + | * 1.0 [[ACET]][c] '''+''' 1.0 [[CPD-10280]][c] '''=>''' 1.0 [[ACETYL-COA]][c] '''+''' 1.0 [[TETRACOSANOATE]][c] |
| | == Gene(s) associated with this reaction == | | == Gene(s) associated with this reaction == |
| − | * Gene: [[SJ18541]]
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | * Gene: [[SJ17851]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[SJ15949]]
| |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| | == Pathway(s) == | | == Pathway(s) == |
| − | * [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
| |
| − | ** '''6''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
| |
| − | ** '''5''' reactions found over '''6''' reactions in the full pathway
| |
| − | * [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
| |
| − | ** '''5''' reactions found over '''6''' reactions in the full pathway
| |
| | == Reconstruction information == | | == Reconstruction information == |
| − | * category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | + | * category: [[gap-filling]]; source: [[gapfilling_solution_with_meneco_draft_medium]]; tool: [[meneco]]; comment: added for gapfilling |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| | == External links == | | == External links == |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
| + | {{#set: direction=left-to-right}} |
| − | * RHEA:
| + | {{#set: nb gene associated=0}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20016 20016]
| + | {{#set: nb pathway associated=0}} |
| − | * LIGAND-RXN:
| + | {{#set: reconstruction category=gap-filling}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R01397 R01397]
| + | {{#set: reconstruction tool=meneco}} |
| − | * UNIPROT:
| + | {{#set: reconstruction comment=added for gapfilling}} |
| − | ** [http://www.uniprot.org/uniprot/P08955 P08955]
| + | {{#set: reconstruction source=gapfilling_solution_with_meneco_draft_medium}} |
| − | ** [http://www.uniprot.org/uniprot/P27708 P27708]
| |
| − | ** [http://www.uniprot.org/uniprot/Q04595 Q04595]
| |
| − | ** [http://www.uniprot.org/uniprot/Q59711 Q59711]
| |
| − | ** [http://www.uniprot.org/uniprot/Q91437 Q91437]
| |
| − | ** [http://www.uniprot.org/uniprot/P65616 P65616]
| |
| − | ** [http://www.uniprot.org/uniprot/Q59712 Q59712]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9CF79 Q9CF79]
| |
| − | ** [http://www.uniprot.org/uniprot/Q58976 Q58976]
| |
| − | ** [http://www.uniprot.org/uniprot/P08421 P08421]
| |
| − | ** [http://www.uniprot.org/uniprot/P0A786 P0A786]
| |
| − | ** [http://www.uniprot.org/uniprot/P0A7F3 P0A7F3]
| |
| − | ** [http://www.uniprot.org/uniprot/P19936 P19936]
| |
| − | ** [http://www.uniprot.org/uniprot/Q58801 Q58801]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9PNJ6 Q9PNJ6]
| |
| − | ** [http://www.uniprot.org/uniprot/P05654 P05654]
| |
| − | ** [http://www.uniprot.org/uniprot/P0A1Z4 P0A1Z4]
| |
| − | ** [http://www.uniprot.org/uniprot/P19910 P19910]
| |
| − | ** [http://www.uniprot.org/uniprot/P07259 P07259]
| |
| − | ** [http://www.uniprot.org/uniprot/P20054 P20054]
| |
| − | ** [http://www.uniprot.org/uniprot/P05990 P05990]
| |
| − | ** [http://www.uniprot.org/uniprot/Q06950 Q06950]
| |
| − | ** [http://www.uniprot.org/uniprot/Q09027 Q09027]
| |
| − | ** [http://www.uniprot.org/uniprot/P49077 P49077]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9S983 Q9S983]
| |
| − | ** [http://www.uniprot.org/uniprot/Q09794 Q09794]
| |
| − | ** [http://www.uniprot.org/uniprot/P74163 P74163]
| |
| − | ** [http://www.uniprot.org/uniprot/Q43064 Q43064]
| |
| − | ** [http://www.uniprot.org/uniprot/Q43086 Q43086]
| |
| − | ** [http://www.uniprot.org/uniprot/Q43087 Q43087]
| |
| − | ** [http://www.uniprot.org/uniprot/Q84493 Q84493]
| |
| − | ** [http://www.uniprot.org/uniprot/Q9UAH8 Q9UAH8]
| |
| − | ** [http://www.uniprot.org/uniprot/Q60252 Q60252]
| |
| − | ** [http://www.uniprot.org/uniprot/P96174 P96174]
| |
| − | ** [http://www.uniprot.org/uniprot/P96175 P96175]
| |
| − | </div>
| |
| − | {{#set: direction=reversible}} | |
| − | {{#set: common-name=aspartate transcarbamylase}}
| |
| − | {{#set: ec-number=ec-2.1.3.2}}
| |
| − | {{#set: nb gene associated=3}} | |
| − | {{#set: nb pathway associated=3}} | |
| − | {{#set: reconstruction category=orthology|annotation}} | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}} | |
| − | {{#set: reconstruction comment=n.a}} | |
| − | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}} | |
