Difference between revisions of "CPD-208"

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(Created page with "Category:gene == Gene SJ21513 == * transcription-direction: ** positive * right-end-position: ** 171648 * left-end-position: ** 165718 * centisome-position: ** 87.023506...")
(Created page with "Category:metabolite == Metabolite CPD-208 == * common-name: ** (s)-malyl-coa * smiles: ** cc(c)(c(o)c(=o)nccc(=o)nccsc(cc(c([o-])=o)o)=o)cop(=o)(op(=o)(occ1(c(op([o-])(=o)...")
 
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[[Category:gene]]
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[[Category:metabolite]]
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== Gene SJ21513 ==
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== Metabolite CPD-208 ==
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* transcription-direction:
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* common-name:
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** positive
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** (s)-malyl-coa
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* right-end-position:
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* smiles:
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** 171648
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** cc(c)(c(o)c(=o)nccc(=o)nccsc(cc(c([o-])=o)o)=o)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
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* left-end-position:
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* inchi-key:
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** 165718
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** hjqwlhmlmcdael-ztgltyrusa-i
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* centisome-position:
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* molecular-weight:
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** 87.023506   
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** 878.568
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to consume the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[RXN-14937]]
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== Reaction(s) associated ==
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== Reaction(s) known to produce the compound ==
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* [[F16ALDOLASE-RXN]]
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== Reaction(s) of unknown directionality ==
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** Category: [[annotation]]
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{{#set: common-name=(s)-malyl-coa}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: inchi-key=inchikey=hjqwlhmlmcdael-ztgltyrusa-i}}
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** Category: [[orthology]]
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{{#set: molecular-weight=878.568}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-8631]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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== Pathway(s) associated ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[CALVIN-PWY]]
 
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** '''12''' reactions found over '''13''' reactions in the full pathway
 
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* [[GLUCONEO-PWY]]
 
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** '''12''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-7385]]
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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* [[P341-PWY]]
 
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** '''6''' reactions found over '''10''' reactions in the full pathway
 
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* [[GLYCOLYSIS]]
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
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* [[ANAGLYCOLYSIS-PWY]]
 
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** '''10''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY66-399]]
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-1042]]
 
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** '''9''' reactions found over '''10''' reactions in the full pathway
 
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* [[SUCSYN-PWY]]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[P185-PWY]]
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-1861]]
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-5484]]
 
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** '''10''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY-6142]]
 
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** '''10''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY66-373]]
 
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** '''3''' reactions found over '''5''' reactions in the full pathway
 
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</div>
 
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{{#set: transcription-direction=positive}}
 
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{{#set: right-end-position=171648}}
 
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{{#set: left-end-position=165718}}
 
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{{#set: centisome-position=87.023506    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
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{{#set: nb reaction associated=2}}
 
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{{#set: nb pathway associated=14}}
 

Latest revision as of 11:12, 18 March 2021

Metabolite CPD-208

  • common-name:
    • (s)-malyl-coa
  • smiles:
    • cc(c)(c(o)c(=o)nccc(=o)nccsc(cc(c([o-])=o)o)=o)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
  • inchi-key:
    • hjqwlhmlmcdael-ztgltyrusa-i
  • molecular-weight:
    • 878.568

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-208&oldid=137372"