Difference between revisions of "CPD-231"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOLACTOSE-RXN KETOLACTOSE-RXN] == * direction: ** left-to-right * common-name: ** beta-galactosid...")
 
(Created page with "Category:gene == Gene SJ18746 == * transcription-direction: ** positive * right-end-position: ** 216178 * left-end-position: ** 214973 * centisome-position: ** 90.343765...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=KETOLACTOSE-RXN KETOLACTOSE-RXN] ==
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== Gene SJ18746 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** positive
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* common-name:
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* right-end-position:
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** beta-galactosidase
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** 216178
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** 3-ketolactose hydrolase
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* left-end-position:
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* ec-number:
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** 214973
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** [http://enzyme.expasy.org/EC/3.2.1.23 ec-3.2.1.23]
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* centisome-position:
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== Reaction formula ==
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** 90.343765   
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* 1 [[3-KETOLACTOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-1242]][c] '''+''' 1 [[Glucopyranose]][c]
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== Organism(s) associated with this gene  ==
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== Gene(s) associated with this reaction  ==
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* [[S.japonica_carotenoid_curated]]
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* Gene: [[SJ14193]]
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== Reaction(s) associated ==
 +
* [[HISTIDINE-DECARBOXYLASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[SJ04558]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ10277]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ03139]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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== Pathway(s) ==
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[LACTOSEUTIL-PWY]], lactose degradation II: [http://metacyc.org/META/NEW-IMAGE?object=LACTOSEUTIL-PWY LACTOSEUTIL-PWY]
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== Pathway(s) associated ==
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6173]]
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== Reconstruction information  ==
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: transcription-direction=positive}}
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: right-end-position=216178}}
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== External links  ==
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{{#set: left-end-position=214973}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: centisome-position=90.343765    }}
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* RHEA:
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=33788 33788]
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{{#set: nb reaction associated=1}}
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R04783 R04783]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P06219 P06219]
 
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** [http://www.uniprot.org/uniprot/P11175 P11175]
 
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** [http://www.uniprot.org/uniprot/P19668 P19668]
 
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** [http://www.uniprot.org/uniprot/P20043 P20043]
 
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** [http://www.uniprot.org/uniprot/P16278 P16278]
 
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** [http://www.uniprot.org/uniprot/P23780 P23780]
 
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** [http://www.uniprot.org/uniprot/P24131 P24131]
 
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** [http://www.uniprot.org/uniprot/Q02603 Q02603]
 
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** [http://www.uniprot.org/uniprot/Q53790 Q53790]
 
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** [http://www.uniprot.org/uniprot/P23989 P23989]
 
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** [http://www.uniprot.org/uniprot/P48982 P48982]
 
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** [http://www.uniprot.org/uniprot/Q9UYG5 Q9UYG5]
 
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** [http://www.uniprot.org/uniprot/Q02604 Q02604]
 
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** [http://www.uniprot.org/uniprot/P0AC73 P0AC73]
 
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** [http://www.uniprot.org/uniprot/O58247 O58247]
 
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** [http://www.uniprot.org/uniprot/Q9UYH2 Q9UYH2]
 
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** [http://www.uniprot.org/uniprot/P00722 P00722]
 
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** [http://www.uniprot.org/uniprot/P06864 P06864]
 
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** [http://www.uniprot.org/uniprot/Q47170 Q47170]
 
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** [http://www.uniprot.org/uniprot/Q59140 Q59140]
 
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** [http://www.uniprot.org/uniprot/P00723 P00723]
 
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** [http://www.uniprot.org/uniprot/P94248 P94248]
 
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** [http://www.uniprot.org/uniprot/O31341 O31341]
 
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** [http://www.uniprot.org/uniprot/P22498 P22498]
 
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** [http://www.uniprot.org/uniprot/Q02401 Q02401]
 
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** [http://www.uniprot.org/uniprot/P26257 P26257]
 
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** [http://www.uniprot.org/uniprot/Q59422 Q59422]
 
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** [http://www.uniprot.org/uniprot/P30812 P30812]
 
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** [http://www.uniprot.org/uniprot/Q12660 Q12660]
 
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** [http://www.uniprot.org/uniprot/P45582 P45582]
 
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** [http://www.uniprot.org/uniprot/P49676 P49676]
 
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** [http://www.uniprot.org/uniprot/Q9SCV3 Q9SCV3]
 
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** [http://www.uniprot.org/uniprot/Q9SZI5 Q9SZI5]
 
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** [http://www.uniprot.org/uniprot/O81100 O81100]
 
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** [http://www.uniprot.org/uniprot/Q42150 Q42150]
 
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** [http://www.uniprot.org/uniprot/P48980 P48980]
 
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** [http://www.uniprot.org/uniprot/P48981 P48981]
 
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** [http://www.uniprot.org/uniprot/O86616 O86616]
 
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** [http://www.uniprot.org/uniprot/P70753 P70753]
 
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** [http://www.uniprot.org/uniprot/P29853 P29853]
 
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** [http://www.uniprot.org/uniprot/P94804 P94804]
 
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</div>
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=3-ketolactose hydrolase|beta-galactosidase}}
 
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{{#set: ec-number=ec-3.2.1.23}}
 
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{{#set: nb gene associated=4}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pathwaytools|pantograph}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Revision as of 14:24, 26 August 2019

Gene SJ18746

  • transcription-direction:
    • positive
  • right-end-position:
    • 216178
  • left-end-position:
    • 214973
  • centisome-position:
    • 90.343765

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6173
    • 1 reactions found over 1 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-231&oldid=21135"