Difference between revisions of "CPD-248"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] == * direction: ** left-to-right * common-name: ** dtmp kinase * ec-number:...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12400 RXN-12400] == * direction: ** left-to-right * common-name: ** xyloglucan xllg oligosaccha...")
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[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTMPKI-RXN DTMPKI-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12400 RXN-12400] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dtmp kinase
+
** xyloglucan xllg oligosaccharide β-galactosidase
 +
** beta-galactosidase
 +
** xllg xyloglucan oligosaccharide β-galactosidase
 
* ec-number:
 
* ec-number:
−
** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12]
+
** [http://enzyme.expasy.org/EC/3.2.1.23 ec-3.2.1.23]
−
** [http://enzyme.expasy.org/EC/2.7.4.13 ec-2.7.4.13]
 
−
** [http://enzyme.expasy.org/EC/2.7.4.9 ec-2.7.4.9]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ATP]][c] '''+''' 1 [[TMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TDP]][c]
+
* 1 [[CPD-13378]][c] '''+''' 2 [[WATER]][c] '''=>''' 1 [[CPD-13375]][c] '''+''' 2 [[D-galactopyranose]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ01455]]
+
* Gene: [[SJ14193]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ04558]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 +
* Gene: [[SJ10277]]
 +
** Category: [[annotation]]
 +
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 +
** Category: [[orthology]]
 +
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 +
* Gene: [[SJ03139]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
+
* [[PWY-6807]], xyloglucan degradation II (exoglucanase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6807 PWY-6807]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 
−
** '''14''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13518 13518]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q57741 Q57741]
 
−
** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
 
−
** [http://www.uniprot.org/uniprot/P0A720 P0A720]
 
−
** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
 
−
** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
 
−
** [http://www.uniprot.org/uniprot/P33803 P33803]
 
−
** [http://www.uniprot.org/uniprot/P42490 P42490]
 
−
** [http://www.uniprot.org/uniprot/P00572 P00572]
 
−
** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
 
−
** [http://www.uniprot.org/uniprot/P68693 P68693]
 
−
** [http://www.uniprot.org/uniprot/P23919 P23919]
 
−
** [http://www.uniprot.org/uniprot/P36590 P36590]
 
−
** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
 
−
** [http://www.uniprot.org/uniprot/O81650 O81650]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dtmp kinase}}
+
{{#set: common-name=xyloglucan xllg oligosaccharide β-galactosidase|xllg xyloglucan oligosaccharide β-galactosidase|beta-galactosidase}}
−
{{#set: ec-number=ec-2.7.4.12|ec-2.7.4.9|ec-2.7.4.13}}
+
{{#set: ec-number=ec-3.2.1.23}}
−
{{#set: nb gene associated=1}}
+
{{#set: nb gene associated=4}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=1}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction RXN-12400

  • direction:
    • left-to-right
  • common-name:
    • xyloglucan xllg oligosaccharide β-galactosidase
    • beta-galactosidase
    • xllg xyloglucan oligosaccharide β-galactosidase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-6807, xyloglucan degradation II (exoglucanase): PWY-6807
    • 3 reactions found over 8 reactions in the full pathway

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-248&oldid=34534"