Difference between revisions of "CPD-2742"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYL-COA-HYDROLASE-RXN ACYL-COA-HYDROLASE-RXN] == * direction: ** left-to-right * common-name: ** a...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8675 RXN-8675] == * direction: ** left-to-right * common-name: ** s-adenosyl-l-methionine:preco...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ACYL-COA-HYDROLASE-RXN ACYL-COA-HYDROLASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8675 RXN-8675] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** acyl-coa hydrolase
+
** s-adenosyl-l-methionine:precorrin-1 c-methyltransferase
−
* ec-number:
+
* synonymous:
−
** [http://enzyme.expasy.org/EC/3.1.2.20 ec-3.1.2.20]
+
** uroporphyrinogen methyltransferase
 +
** uroporphyrin-iii c-methyltransferase (incorrect)
 +
** sira
 +
** cysg
 +
** s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)
 +
** s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase
 +
** adenosylmethionine-uroporphyrinogen iii methyltransferase
 +
** uroporphyrinogen-iii methyltransferase
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[ACYL-COA]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[Carboxylates]][c] '''+''' 1 [[PROTON]][c]
+
* 1 [[CPD-9038]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[DIHYDROSIROHYDROCHLORIN]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ18316]]
+
* Gene: [[SJ12313]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
−
* Gene: [[SJ09637]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
−
* Gene: [[SJ09703]]
 
−
** Category: [[annotation]]
 
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
 
== Pathway(s)  ==
 
== Pathway(s)  ==
 +
* [[PWY-7376]], cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7376 PWY-7376]
 +
** '''2''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7377]], cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7377 PWY-7377]
 +
** '''4''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-5196]], factor 430 biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5196 PWY-5196]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5194]], siroheme biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5194 PWY-5194]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16782 16782]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21973 21973]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00383 R00383]
+
** [http://www.genome.jp/dbget-bin/www_bget?R07238 R07238]
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/O00154 O00154]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=acyl-coa hydrolase}}
+
{{#set: common-name=s-adenosyl-l-methionine:precorrin-1 c-methyltransferase}}
−
{{#set: ec-number=ec-3.1.2.20}}
+
{{#set: synonymous=uroporphyrinogen methyltransferase|s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase|s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)|sira|uroporphyrinogen-iii methyltransferase|uroporphyrin-iii c-methyltransferase (incorrect)|adenosylmethionine-uroporphyrinogen iii methyltransferase|cysg}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=0}}
+
{{#set: nb pathway associated=4}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=annotation|orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}

Revision as of 09:29, 27 August 2019

Reaction RXN-8675

  • direction:
    • left-to-right
  • common-name:
    • s-adenosyl-l-methionine:precorrin-1 c-methyltransferase
  • synonymous:
    • uroporphyrinogen methyltransferase
    • uroporphyrin-iii c-methyltransferase (incorrect)
    • sira
    • cysg
    • s-adenosyl-l-methionine:uroporphyrin-iii c-methyltransferase (incorrect)
    • s-adenosyl-l-methionine-dependent uroporphyrinogen iii methylase
    • adenosylmethionine-uroporphyrinogen iii methyltransferase
    • uroporphyrinogen-iii methyltransferase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY-7376, cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation): PWY-7376
    • 2 reactions found over 13 reactions in the full pathway
  • PWY-7377, cob(II)yrinate a,c-diamide biosynthesis I (early cobalt insertion): PWY-7377
    • 4 reactions found over 15 reactions in the full pathway
  • PWY-5196, factor 430 biosynthesis: PWY-5196
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-5194, siroheme biosynthesis: PWY-5194
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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