Difference between revisions of "CPD-281"

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(Created page with "Category:gene == Gene SJ16950 == * transcription-direction: ** negative * right-end-position: ** 521708 * left-end-position: ** 506485 * centisome-position: ** 74.264336...")
(Created page with "Category:gene == Gene SJ09480 == * transcription-direction: ** positive * right-end-position: ** 30908 * left-end-position: ** 25958 * centisome-position: ** 63.98955...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ16950 ==
+
== Gene SJ09480 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 521708
+
** 30908
 
* left-end-position:
 
* left-end-position:
−
** 506485
+
** 25958
 
* centisome-position:
 
* centisome-position:
−
** 74.264336    
+
** 63.98955    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[3.1.3.46-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
 
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[F16BDEPHOS-RXN]]
+
* [[6-PHOSPHOFRUCTO-2-KINASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
* [[SUGAR-PHOSPHATASE-RXN]]
 
* [[SUGAR-PHOSPHATASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[P185-PWY]]
+
* [[PWY66-423]]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY66-399]]
+
{{#set: transcription-direction=positive}}
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
{{#set: right-end-position=30908}}
−
* [[SUCSYN-PWY]]
+
{{#set: left-end-position=25958}}
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
{{#set: centisome-position=63.98955   }}
−
* [[CALVIN-PWY]]
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[GLUCONEO-PWY]]
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5484]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[GLYCOLYSIS]]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=521708}}
 
−
{{#set: left-end-position=506485}}
 
−
{{#set: centisome-position=74.264336   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=4}}
 
{{#set: nb reaction associated=4}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=1}}

Revision as of 09:27, 27 August 2019

Gene SJ09480

  • transcription-direction:
    • positive
  • right-end-position:
    • 30908
  • left-end-position:
    • 25958
  • centisome-position:
    • 63.98955

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY66-423
    • 2 reactions found over 2 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-281&oldid=32495"