Difference between revisions of "CPD-315"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCDPKIN-RXN DCDPKIN-RXN] == * direction: ** left-to-right * common-name: ** nucleoside diphosphate...")
(Created page with "Category:metabolite == Metabolite CPD-315 == * common-name: ** cyanocob(iii)alamin * smiles: ** cc4(=c(c)c=c3(n2(c%12(oc(co)c(op(=o)(o[ch](c)cnc(=o)ccc1(c)(c(cc(=o)n)[ch]%...")
 
(8 intermediate revisions by 4 users not shown)
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DCDPKIN-RXN DCDPKIN-RXN] ==
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== Metabolite CPD-315 ==
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** nucleoside diphosphate kinase
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** cyanocob(iii)alamin
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** dcdp kinase
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* smiles:
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* ec-number:
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** cc4(=c(c)c=c3(n2(c%12(oc(co)c(op(=o)(o[ch](c)cnc(=o)ccc1(c)(c(cc(=o)n)[ch]%11(c8(c)(c(cc(=o)n)(c)c(ccc(=o)n)c7(c(c)=c%10(c(cc(=o)n)(c)c(ccc(=o)n)c9(c=c6(c(c)(c)c(ccc(=o)n)c5(c(c)=c1n([co---]([n+](=c2)c3=c4)(c#n)([n+]=56)([n+]=78)[n+]=9%10)%11)))))))))[o-])c(o)%12))))
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** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
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* inchi-key:
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== Reaction formula ==
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** rmrcnwbmxrmirw-wzhzpdafsa-l
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* 1 [[ATP]][c] '''+''' 1 [[DCDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DCTP]][c]
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* molecular-weight:
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== Gene(s) associated with this reaction  ==
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** 1355.377
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) known to consume the compound ==
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* Gene: [[SJ07124]]
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* [[ExchangeSeed-CPD-315]]
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** Category: [[annotation]]
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* [[TransportSeed-CPD-315]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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== Reaction(s) known to produce the compound ==
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** Category: [[orthology]]
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* [[ExchangeSeed-CPD-315]]
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[TransportSeed-CPD-315]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Reaction(s) of unknown directionality ==
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* Gene: [[SJ21967]]
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{{#set: common-name=cyanocob(iii)alamin}}
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** Category: [[annotation]]
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{{#set: inchi-key=inchikey=rmrcnwbmxrmirw-wzhzpdafsa-l}}
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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{{#set: molecular-weight=1355.377}}
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* Gene: [[SJ10125]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ16893]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ20794]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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* Gene: [[SJ08159]]
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ21816]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ21705]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
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* Gene: [[SJ20076]]
 
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** Category: [[annotation]]
 
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
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</div>
 
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== Pathway(s) ==
 
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6545 PWY-6545]
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7197 PWY-7197]
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 
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** '''14''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7210 PWY-7210]
 
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** '''8''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7198 PWY-7198]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7184 PWY-7184]
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27679 27679]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R02326 R02326]
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=nucleoside diphosphate kinase|dcdp kinase}}
 
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{{#set: ec-number=ec-2.7.4.6}}
 
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{{#set: nb gene associated=9}}
 
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{{#set: nb pathway associated=6}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Latest revision as of 11:17, 18 March 2021

Metabolite CPD-315

  • common-name:
    • cyanocob(iii)alamin
  • smiles:
    • cc4(=c(c)c=c3(n2(c%12(oc(co)c(op(=o)(o[ch](c)cnc(=o)ccc1(c)(c(cc(=o)n)[ch]%11(c8(c)(c(cc(=o)n)(c)c(ccc(=o)n)c7(c(c)=c%10(c(cc(=o)n)(c)c(ccc(=o)n)c9(c=c6(c(c)(c)c(ccc(=o)n)c5(c(c)=c1n([co---]([n+](=c2)c3=c4)(c#n)([n+]=56)([n+]=78)[n+]=9%10)%11)))))))))[o-])c(o)%12))))
  • inchi-key:
    • rmrcnwbmxrmirw-wzhzpdafsa-l
  • molecular-weight:
    • 1355.377

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-315&oldid=139707"