Difference between revisions of "CPD-3486"

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(Created page with "Category:gene == Gene SJ02123 == * transcription-direction: ** negative * right-end-position: ** 17320 * left-end-position: ** 12475 * centisome-position: ** 8.820556...")
(Created page with "Category:gene == Gene SJ22353 == * transcription-direction: ** positive * right-end-position: ** 103013 * left-end-position: ** 88243 * centisome-position: ** 15.250728...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ02123 ==
+
== Gene SJ22353 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 17320
+
** 103013
 
* left-end-position:
 
* left-end-position:
−
** 12475
+
** 88243
 
* centisome-position:
 
* centisome-position:
−
** 8.820556    
+
** 15.250728    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
−
* [[ATPASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
* [[ACID-PHOSPHATASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[PROTEIN-KINASE-RXN]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[RXN-5822]]
−
* [[RXN-12195]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-12196]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-8443]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN0-5462]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-7210]]
+
* [[PWY-6348]]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-7198]]
+
* [[NAD-BIOSYNTHESIS-II]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''4''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7184]]
+
* [[NADPHOS-DEPHOS-PWY]]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6545]]
+
* [[PWY-5083]]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5381]]
+
{{#set: transcription-direction=positive}}
−
** '''6''' reactions found over '''11''' reactions in the full pathway
+
{{#set: right-end-position=103013}}
−
{{#set: transcription-direction=negative}}
+
{{#set: left-end-position=88243}}
−
{{#set: right-end-position=17320}}
+
{{#set: centisome-position=15.250728   }}
−
{{#set: left-end-position=12475}}
 
−
{{#set: centisome-position=8.820556   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=7}}
+
{{#set: nb reaction associated=3}}
−
{{#set: nb pathway associated=5}}
+
{{#set: nb pathway associated=4}}

Revision as of 09:27, 27 August 2019

Gene SJ22353

  • transcription-direction:
    • positive
  • right-end-position:
    • 103013
  • left-end-position:
    • 88243
  • centisome-position:
    • 15.250728

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6348
    • 1 reactions found over 1 reactions in the full pathway
  • NAD-BIOSYNTHESIS-II
    • 4 reactions found over 3 reactions in the full pathway
  • NADPHOS-DEPHOS-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5083
    • 5 reactions found over 6 reactions in the full pathway




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