Difference between revisions of "CPD-3710"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.11-RXN 1.5.1.11-RXN] == * direction: ** left-to-right * common-name: ** d-octopine dehydrogen...")
(Created page with "Category:gene == Gene SJ05680 == * transcription-direction: ** positive * right-end-position: ** 9275 * left-end-position: ** 2141 * centisome-position: ** 2.3895357 =...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.11-RXN 1.5.1.11-RXN] ==
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== Gene SJ05680 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** positive
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* common-name:
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* right-end-position:
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** d-octopine dehydrogenase
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** 9275
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* ec-number:
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* left-end-position:
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** [http://enzyme.expasy.org/EC/1.5.1.11 ec-1.5.1.11]
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** 2141
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== Reaction formula ==
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* centisome-position:
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* 1 [[ARG]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[CPD-309]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c]
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** 2.3895357   
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[SJ15888]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) associated ==
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* [[RXN-11356]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s)  ==
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** Category: [[orthology]]
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* [[PWY-7351]], pyruvate fermentation to opines: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7351 PWY-7351]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[RXN-11357]]
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== Reconstruction information  ==
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** Category: [[annotation]]
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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** Category: [[orthology]]
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* RHEA:
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16287 16287]
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* [[RXN-12242]]
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* LIGAND-RXN:
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** Category: [[annotation]]
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** [http://www.genome.jp/dbget-bin/www_bget?R00562 R00562]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: direction=left-to-right}}
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** Category: [[orthology]]
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{{#set: common-name=d-octopine dehydrogenase}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: ec-number=ec-1.5.1.11}}
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== Pathway(s) associated ==
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{{#set: nb gene associated=1}}
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* [[PWY-6475]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=9275}}
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{{#set: left-end-position=2141}}
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{{#set: centisome-position=2.3895357    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=3}}
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=annotation}}
 
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{{#set: reconstruction tool=pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=saccharina_japonica_genome}}
 

Revision as of 09:28, 27 August 2019

Gene SJ05680

  • transcription-direction:
    • positive
  • right-end-position:
    • 9275
  • left-end-position:
    • 2141
  • centisome-position:
    • 2.3895357

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6475
    • 8 reactions found over 8 reactions in the full pathway




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