Difference between revisions of "CPD-4618"
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(Created page with "Category:gene == Gene SJ11801 == * transcription-direction: ** positive * right-end-position: ** 10232 * left-end-position: ** 8883 * centisome-position: ** 46.248764...") |
(Created page with "Category:gene == Gene SJ01083 == * transcription-direction: ** negative * right-end-position: ** 43687 * left-end-position: ** 29076 * centisome-position: ** 18.686615...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ01083 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 43687 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 29076 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 18.686615 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[ANTHRANSYN-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | * [[IGPSYN-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | + | ** Category: [[orthology]] | |
| − | ** Category: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
| − | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | + | * [[PRAISOM-RXN]] | |
| − | |||
| − | *** source: [[ | ||
| − | * [[RXN | ||
| − | |||
| − | |||
| − | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PWY-5958]] |
| − | ** ''' | + | ** '''1''' reactions found over '''4''' reactions in the full pathway |
| − | * [[PWY | + | * [[TRPSYN-PWY]] |
| − | ** '''6''' reactions found over ''' | + | ** '''6''' reactions found over '''6''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-6661]] |
| − | ** ''' | + | ** '''1''' reactions found over '''5''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-6660]] |
| − | ** ''' | + | ** '''1''' reactions found over '''8''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | {{#set: transcription-direction=negative}} |
| − | {{#set: right-end-position= | + | {{#set: right-end-position=43687}} |
| − | {{#set: left-end-position= | + | {{#set: left-end-position=29076}} |
| − | {{#set: centisome-position= | + | {{#set: centisome-position=18.686615 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
{{#set: nb pathway associated=4}} | {{#set: nb pathway associated=4}} | ||
Revision as of 09:28, 27 August 2019
Contents
Gene SJ01083
- transcription-direction:
- negative
- right-end-position:
- 43687
- left-end-position:
- 29076
- centisome-position:
- 18.686615
Organism(s) associated with this gene
Reaction(s) associated
- ANTHRANSYN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- IGPSYN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- PRAISOM-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-5958
- 1 reactions found over 4 reactions in the full pathway
- TRPSYN-PWY
- 6 reactions found over 6 reactions in the full pathway
- PWY-6661
- 1 reactions found over 5 reactions in the full pathway
- PWY-6660
- 1 reactions found over 8 reactions in the full pathway
