Difference between revisions of "CPD-5846"

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(Created page with "Category:gene == Gene SJ06882 == * transcription-direction: ** positive * right-end-position: ** 362793 * left-end-position: ** 349863 * centisome-position: ** 74.659256...")
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14047 RXN-14047] == * direction: ** reversible * ec-number: ** [http://enzyme.expasy.org/EC/4.2...")
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[[Category:gene]]
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[[Category:reaction]]
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== Gene SJ06882 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14047 RXN-14047] ==
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* transcription-direction:
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* direction:
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** positive
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** reversible
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* right-end-position:
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* ec-number:
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** 362793
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** [http://enzyme.expasy.org/EC/4.2.1.3 ec-4.2.1.3]
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* left-end-position:
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== Reaction formula ==
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** 349863
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* 1 [[CIT]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
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* centisome-position:
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== Gene(s) associated with this reaction  ==
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** 74.659256   
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* Gene: [[SJ22396]]
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== Organism(s) associated with this gene  ==
 
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* [[S.japonica_carotenoid_curated]]
 
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== Reaction(s) associated ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[PROTEIN-TYROSINE-PHOSPHATASE-RXN]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[RXN-11750]]
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* Gene: [[SJ18471]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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* [[RXN-12969]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s)  ==
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* [[RXN-13001]]
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== Reconstruction information  ==
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** Category: [[annotation]]
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-13302]]
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== External links  ==
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** Category: [[annotation]]
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* RHEA:
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10339 10339]
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* [[RXN-13303]]
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* LIGAND-RXN:
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** Category: [[annotation]]
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** [http://www.genome.jp/dbget-bin/www_bget?R01324 R01324]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: direction=reversible}}
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* [[RXN-13304]]
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{{#set: ec-number=ec-4.2.1.3}}
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** Category: [[annotation]]
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{{#set: nb gene associated=2}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: nb pathway associated=0}}
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* [[RXN-13305]]
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{{#set: reconstruction category=annotation|orthology}}
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** Category: [[annotation]]
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: reconstruction comment=n.a}}
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* [[RXN-13444]]
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{{#set: reconstruction source=output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-14485]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-14494]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-16021]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-16096]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-16113]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-16130]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-16155]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-17110]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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</div>
 
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== Pathway(s) associated ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[PWY-5080]]
 
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** '''3''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7592]]
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-5353]]
 
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** '''7''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7724]]
 
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** '''4''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7619]]
 
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** '''3''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-7602]]
 
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** '''4''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7036]]
 
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** '''14''' reactions found over '''16''' reactions in the full pathway
 
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* [[PWY-7053]]
 
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** '''3''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7606]]
 
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** '''8''' reactions found over '''14''' reactions in the full pathway
 
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* [[PWY-7727]]
 
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** '''2''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-6433]]
 
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** '''17''' reactions found over '''22''' reactions in the full pathway
 
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* [[PWY-6958]]
 
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** '''5''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7049]]
 
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** '''4''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7725]]
 
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** '''5''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-6598]]
 
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** '''4''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-7601]]
 
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** '''5''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7726]]
 
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** '''8''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-7728]]
 
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** '''2''' reactions found over '''5''' reactions in the full pathway
 
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</div>
 
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{{#set: transcription-direction=positive}}
 
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{{#set: right-end-position=362793}}
 
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{{#set: left-end-position=349863}}
 
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{{#set: centisome-position=74.659256    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
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{{#set: nb reaction associated=17}}
 
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{{#set: nb pathway associated=18}}
 

Revision as of 09:28, 27 August 2019

Reaction RXN-14047

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links





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