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| − | [[Category:reaction]] | + | [[Category:metabolite]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PNPOXI-RXN PNPOXI-RXN] == | + | == Metabolite CPD-6242 == |
| − | * direction:
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| − | ** left-to-right
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| | * common-name: | | * common-name: |
| − | ** pyridoxamine-phosphate oxidase | + | ** a protein-o-(n-acetyl-d-glucosaminyl)-trans-4-hydroxy-l-proline |
| − | ** pyridoxine 5'-phosphate oxidase
| + | == Reaction(s) known to consume the compound == |
| − | * ec-number:
| + | * [[2.4.1.229-RXN]] |
| − | ** [http://enzyme.expasy.org/EC/1.4.3.5 ec-1.4.3.5]
| + | == Reaction(s) known to produce the compound == |
| − | == Reaction formula ==
| + | * [[2.4.1.229-RXN]] |
| − | * 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[PYRIDOXINE-5P]][c] '''=>''' 1 [[HYDROGEN-PEROXIDE]][c] '''+''' 1 [[PYRIDOXAL_PHOSPHATE]][c]
| + | == Reaction(s) of unknown directionality == |
| − | == Gene(s) associated with this reaction == | + | {{#set: common-name=a protein-o-(n-acetyl-d-glucosaminyl)-trans-4-hydroxy-l-proline}} |
| − | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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| − | * Gene: [[SJ01932]]
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| − | ** Category: [[annotation]] | |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ08123]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ18666]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ21118]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | * Gene: [[SJ03655]]
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| − | ** Category: [[annotation]]
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| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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| − | ** Category: [[orthology]]
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| − | *** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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| − | </div>
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| − | == Pathway(s) == | |
| − | * [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
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| − | ** '''3''' reactions found over '''7''' reactions in the full pathway
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| − | * [[PLPSAL-PWY]], pyridoxal 5'-phosphate salvage I: [http://metacyc.org/META/NEW-IMAGE?object=PLPSAL-PWY PLPSAL-PWY]
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| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
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| − | * [[PWY-7204]], pyridoxal 5'-phosphate salvage II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7204 PWY-7204]
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| − | ** '''9''' reactions found over '''9''' reactions in the full pathway
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| − | * [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282] | |
| − | ** '''6''' reactions found over '''9''' reactions in the full pathway
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| − | == Reconstruction information ==
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| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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| − | * category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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| − | == External links == | |
| − | * RHEA:
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| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15150 15150]
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| − | * LIGAND-RXN:
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| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00278 R00278]
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| − | {{#set: direction=left-to-right}}
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| − | {{#set: common-name=pyridoxamine-phosphate oxidase|pyridoxine 5'-phosphate oxidase}} | |
| − | {{#set: ec-number=ec-1.4.3.5}}
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| − | {{#set: nb gene associated=5}}
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| − | {{#set: nb pathway associated=4}}
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| − | {{#set: reconstruction category=orthology|annotation}}
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| − | {{#set: reconstruction tool=pathwaytools|pantograph}}
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| − | {{#set: reconstruction comment=n.a}}
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| − | {{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
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