Difference between revisions of "CPD-653"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.57-RXN 2.1.1.57-RXN] == * direction: ** left-to-right * common-name: ** cap1 methyltransferas...")
(Created page with "Category:gene == Gene SJ00988 == * transcription-direction: ** negative * right-end-position: ** 49399 * left-end-position: ** 36912 * centisome-position: ** 23.236431...")
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.57-RXN 2.1.1.57-RXN] ==
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== Gene SJ00988 ==
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* direction:
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* transcription-direction:
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** left-to-right
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** negative
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* common-name:
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* right-end-position:
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** cap1 methyltransferase
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** 49399
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* ec-number:
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* left-end-position:
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** [http://enzyme.expasy.org/EC/2.1.1.57 ec-2.1.1.57]
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** 36912
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== Reaction formula ==
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* centisome-position:
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* 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[m7G5-pppR-mRNAs]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[m7G5-pppRm-mRNAs]][c]
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** 23.236431   
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[SJ13294]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) associated ==
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* [[2.4.1.151-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s)  ==
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* [[RXN-1225]]
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* [[PWY-7379]], mRNA capping II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7379 PWY-7379]
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** Category: [[annotation]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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* [[RXN-18302]]
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[annotation]]
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== External links  ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* RHEA:
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== Pathway(s) associated ==
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19618 19618]
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* [[PWY-7434]]
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* LIGAND-RXN:
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** '''5''' reactions found over '''8''' reactions in the full pathway
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** [http://www.genome.jp/dbget-bin/www_bget?R03922 R03922]
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* [[PWY-401]]
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* UNIPROT:
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** '''2''' reactions found over '''5''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P07617 P07617]
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* [[PWY-7666]]
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{{#set: direction=left-to-right}}
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** '''1''' reactions found over '''3''' reactions in the full pathway
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{{#set: common-name=cap1 methyltransferase}}
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* [[PWY-7840]]
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{{#set: ec-number=ec-2.1.1.57}}
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** '''3''' reactions found over '''5''' reactions in the full pathway
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{{#set: nb gene associated=1}}
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{{#set: transcription-direction=negative}}
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{{#set: nb pathway associated=1}}
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{{#set: right-end-position=49399}}
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{{#set: reconstruction category=annotation}}
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{{#set: left-end-position=36912}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: centisome-position=23.236431    }}
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{{#set: reconstruction comment=n.a}}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: reconstruction source=saccharina_japonica_genome}}
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{{#set: nb reaction associated=3}}
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{{#set: nb pathway associated=4}}

Revision as of 09:28, 27 August 2019

Gene SJ00988

  • transcription-direction:
    • negative
  • right-end-position:
    • 49399
  • left-end-position:
    • 36912
  • centisome-position:
    • 23.236431

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7434
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-401
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7666
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7840
    • 3 reactions found over 5 reactions in the full pathway




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