Difference between revisions of "CPD-7004"

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(Created page with "Category:gene == Gene SJ00411 == * transcription-direction: ** positive * right-end-position: ** 565924 * left-end-position: ** 560840 * centisome-position: ** 98.76343...")
(Created page with "Category:metabolite == Metabolite CPD-7004 == * common-name: ** dihydrogeranylgeranyl chlorophyll a * smiles: ** c=cc2(c(c)=c4(c=c9(c(c)c(ccc(=o)occ=c(c)cccc(c)ccc=c(c)ccc...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:gene]]
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[[Category:metabolite]]
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== Gene SJ00411 ==
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== Metabolite CPD-7004 ==
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* transcription-direction:
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* common-name:
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** positive
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** dihydrogeranylgeranyl chlorophyll a
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* right-end-position:
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* smiles:
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** 565924
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** c=cc2(c(c)=c4(c=c9(c(c)c(ccc(=o)occ=c(c)cccc(c)ccc=c(c)ccc=c(c)c)c5(=[n+]([mg--]36([n+]1(=c(c(cc)=c(c)c1=cc=2n34)c=c7(c(c)=c8(c(=o)[c-](c(oc)=o)c5=c(n67)8)))))9))))
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* left-end-position:
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* inchi-key:
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** 560840
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** qhucplmrabczrd-usxfxjnzsa-m
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* centisome-position:
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* molecular-weight:
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** 98.76343   
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** 888.463
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to consume the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[RXN-7665]]
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== Reaction(s) associated ==
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== Reaction(s) known to produce the compound ==
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* [[RIB5PISOM-RXN]]
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* [[RXN-7664]]
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** Category: [[annotation]]
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== Reaction(s) of unknown directionality ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: common-name=dihydrogeranylgeranyl chlorophyll a}}
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** Category: [[orthology]]
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{{#set: inchi-key=inchikey=qhucplmrabczrd-usxfxjnzsa-m}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: molecular-weight=888.463}}
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== Pathway(s) associated ==
 
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* [[P124-PWY]]
 
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** '''12''' reactions found over '''15''' reactions in the full pathway
 
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* [[P185-PWY]]
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
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* [[NONOXIPENT-PWY]]
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-5723]]
 
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** '''10''' reactions found over '''10''' reactions in the full pathway
 
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* [[CALVIN-PWY]]
 
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** '''12''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-1861]]
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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{{#set: transcription-direction=positive}}
 
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{{#set: right-end-position=565924}}
 
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{{#set: left-end-position=560840}}
 
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{{#set: centisome-position=98.76343    }}
 
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{{#set: organism associated=S.japonica_carotenoid_curated}}
 
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{{#set: nb reaction associated=1}}
 
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{{#set: nb pathway associated=6}}
 

Latest revision as of 11:11, 18 March 2021

Metabolite CPD-7004

  • common-name:
    • dihydrogeranylgeranyl chlorophyll a
  • smiles:
    • c=cc2(c(c)=c4(c=c9(c(c)c(ccc(=o)occ=c(c)cccc(c)ccc=c(c)ccc=c(c)c)c5(=[n+]([mg--]36([n+]1(=c(c(cc)=c(c)c1=cc=2n34)c=c7(c(c)=c8(c(=o)[c-](c(oc)=o)c5=c(n67)8)))))9))))
  • inchi-key:
    • qhucplmrabczrd-usxfxjnzsa-m
  • molecular-weight:
    • 888.463

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

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