Difference between revisions of "CPD-709"
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(Created page with "Category:gene == Gene SJ16370 == * transcription-direction: ** negative * right-end-position: ** 141477 * left-end-position: ** 134611 * centisome-position: ** 47.60677...") |
(Created page with "Category:gene == Gene SJ16475 == * transcription-direction: ** positive * right-end-position: ** 49104 * left-end-position: ** 40372 * centisome-position: ** 14.320985...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ16475 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 49104 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 40372 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 14.320985 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[1.1.1.8-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | + | ** Category: [[orthology]] | |
| − | ** Category: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
| − | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | + | * [[GLYC3PDEHYDROGBIOSYN-RXN]] | |
| − | |||
| − | *** source: [[ | ||
| − | * [[RXN | ||
| − | |||
| − | |||
| − | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PWY-6118]] |
| − | ** ''' | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-7385]] |
| − | ** ''' | + | ** '''7''' reactions found over '''9''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-7411]] |
| − | ** ''' | + | ** '''4''' reactions found over '''5''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-7902]] |
| − | ** ''' | + | ** '''2''' reactions found over '''5''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[PWY-5981]] |
| − | {{#set: right-end-position= | + | ** '''3''' reactions found over '''5''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[PWY0-1319]] |
| − | {{#set: centisome-position= | + | ** '''4''' reactions found over '''4''' reactions in the full pathway |
| + | * [[PWY-5667]] | ||
| + | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=49104}} | ||
| + | {{#set: left-end-position=40372}} | ||
| + | {{#set: centisome-position=14.320985 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=2}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=7}} |
Revision as of 14:23, 26 August 2019
Contents
Gene SJ16475
- transcription-direction:
- positive
- right-end-position:
- 49104
- left-end-position:
- 40372
- centisome-position:
- 14.320985
Organism(s) associated with this gene
Reaction(s) associated
- 1.1.1.8-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- GLYC3PDEHYDROGBIOSYN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6118
- 2 reactions found over 2 reactions in the full pathway
- PWY-7385
- 7 reactions found over 9 reactions in the full pathway
- PWY-7411
- 4 reactions found over 5 reactions in the full pathway
- PWY-7902
- 2 reactions found over 5 reactions in the full pathway
- PWY-5981
- 3 reactions found over 5 reactions in the full pathway
- PWY0-1319
- 4 reactions found over 4 reactions in the full pathway
- PWY-5667
- 4 reactions found over 4 reactions in the full pathway
