Difference between revisions of "CPD-7417"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPDEHYDRHAMEPIM-RXN DTDPDEHYDRHAMEPIM-RXN] == * direction: ** left-to-right * common-name: ** dtd...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPS GPPS] == * direction: ** left-to-right * common-name: ** geranyl pyrophosphate synthase == Rea...")
Line 1: Line 1:
 
[[Category:reaction]]
 
[[Category:reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPDEHYDRHAMEPIM-RXN DTDPDEHYDRHAMEPIM-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GPPS GPPS] ==
 
* direction:
 
* direction:
 
** left-to-right
 
** left-to-right
 
* common-name:
 
* common-name:
−
** dtdp-4-dehydrorhamnose 3,5-epimerase
+
** geranyl pyrophosphate synthase
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/5.1.3.13 ec-5.1.3.13]
 
 
== Reaction formula ==
 
== Reaction formula ==
−
* 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-MANNOSE]][c]
+
* 1.0 [[CPD-4211]][c] '''+''' 1.0 [[DELTA3-ISOPENTENYL-PP]][c] '''=>''' 1.0 [[GERANYL-PP]][c] '''+''' 1.0 [[PPI]][c]
 
== Gene(s) associated with this reaction  ==
 
== Gene(s) associated with this reaction  ==
−
* Gene: [[SJ22556]]
+
* Gene: [[SJ10346]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
+
*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
 
== Pathway(s)  ==
 
== Pathway(s)  ==
−
* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7301]], dTDP-4-O-demethyl-β-L-noviose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7301 PWY-7301]
 
−
** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7814]], dTDP-L-daunosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7814 PWY-7814]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16969 16969]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R06514 R06514]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9JWX1 Q9JWX1]
 
−
** [http://www.uniprot.org/uniprot/Q9JWW7 Q9JWW7]
 
−
** [http://www.uniprot.org/uniprot/Q9UZG9 Q9UZG9]
 
−
** [http://www.uniprot.org/uniprot/P37745 P37745]
 
−
** [http://www.uniprot.org/uniprot/Q7M0V5 Q7M0V5]
 
−
** [http://www.uniprot.org/uniprot/P37763 P37763]
 
−
** [http://www.uniprot.org/uniprot/Q46770 Q46770]
 
−
** [http://www.uniprot.org/uniprot/P29783 P29783]
 
 
{{#set: direction=left-to-right}}
 
{{#set: direction=left-to-right}}
−
{{#set: common-name=dtdp-4-dehydrorhamnose 3,5-epimerase}}
+
{{#set: common-name=geranyl pyrophosphate synthase}}
−
{{#set: ec-number=ec-5.1.3.13}}
 
 
{{#set: nb gene associated=1}}
 
{{#set: nb gene associated=1}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=0}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction comment=n.a}}
−
{{#set: reconstruction source=saccharina_japonica_genome}}
+
{{#set: reconstruction source=output_pantograph_nannochloropsis_salina}}

Revision as of 14:24, 26 August 2019

Reaction GPPS

  • direction:
    • left-to-right
  • common-name:
    • geranyl pyrophosphate synthase

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

Reconstruction information

External links

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-7417&oldid=21528"