Difference between revisions of "CPD-8164"

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(Created page with "Category:gene == Gene SJ02144 == * transcription-direction: ** negative * right-end-position: ** 82479 * left-end-position: ** 74261 * centisome-position: ** 52.671112...")
 
(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] == * direction: ** left-to-right * common-name: ** naringenin chalcone iso...")
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[[Category:gene]]
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[[Category:reaction]]
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== Gene SJ02144 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] ==
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* transcription-direction:
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* direction:
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** negative
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** left-to-right
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* right-end-position:
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* common-name:
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** 82479
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** naringenin chalcone isomerase
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* left-end-position:
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** chalcone isomerase
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** 74261
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* ec-number:
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* centisome-position:
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** [http://enzyme.expasy.org/EC/5.5.1.6 ec-5.5.1.6]
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** 52.671112   
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== Reaction formula ==
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== Organism(s) associated with this gene  ==
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* 1 [[CPD-20012]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c]
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* [[S.japonica_carotenoid_curated]]
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== Gene(s) associated with this reaction  ==
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== Reaction(s) associated ==
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* Gene: [[SJ09285]]
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* [[2.4.1.82-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [[ALPHAGALACTOSID-RXN]]
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** Category: [[orthology]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* Gene: [[SJ20427]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [[RXN-11501]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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* [[RXN-11502]]
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* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
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** Category: [[annotation]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
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* [[RXN-12088]]
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** '''6''' reactions found over '''10''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[RXN-17830]]
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* [[PWY-7897]], flavonoid di-C-glucosylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7897 PWY-7897]
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** Category: [[annotation]]
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** '''3''' reactions found over '''15''' reactions in the full pathway
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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== Pathway(s) associated ==
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[PWY-5337]]
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== External links  ==
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* [[PWY-6524]]
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* LIGAND-RXN:
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** '''2''' reactions found over '''4''' reactions in the full pathway
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** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
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* [[PWY-6525]]
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* UNIPROT:
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** '''2''' reactions found over '''5''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P11650 P11650]
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* [[PWY0-1301]]
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** [http://www.uniprot.org/uniprot/P11651 P11651]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P41088 P41088]
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* [[PWY-6527]]
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** [http://www.uniprot.org/uniprot/P14298 P14298]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/Q42925 Q42925]
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{{#set: transcription-direction=negative}}
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** [http://www.uniprot.org/uniprot/Q42926 Q42926]
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{{#set: right-end-position=82479}}
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** [http://www.uniprot.org/uniprot/Q08704 Q08704]
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{{#set: left-end-position=74261}}
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** [http://www.uniprot.org/uniprot/P28012 P28012]
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{{#set: centisome-position=52.671112    }}
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** [http://www.uniprot.org/uniprot/P41089 P41089]
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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** [http://www.uniprot.org/uniprot/O81980 O81980]
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{{#set: nb reaction associated=6}}
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** [http://www.uniprot.org/uniprot/O22604 O22604]
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{{#set: nb pathway associated=5}}
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** [http://www.uniprot.org/uniprot/O22651 O22651]
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** [http://www.uniprot.org/uniprot/Q43754 Q43754]
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{{#set: direction=left-to-right}}
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{{#set: common-name=naringenin chalcone isomerase|chalcone isomerase}}
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{{#set: ec-number=ec-5.5.1.6}}
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{{#set: nb gene associated=2}}
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{{#set: nb pathway associated=4}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: reconstruction comment=n.a}}
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{{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}

Revision as of 14:24, 26 August 2019

Reaction APIGNAR-RXN

  • direction:
    • left-to-right
  • common-name:
    • naringenin chalcone isomerase
    • chalcone isomerase
  • ec-number:

Reaction formula

Gene(s) associated with this reaction

Pathway(s)

  • PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6787, flavonoid biosynthesis (in equisetum): PWY-6787
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-7397, naringenin biosynthesis (engineered): PWY-7397
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7897, flavonoid di-C-glucosylation: PWY-7897
    • 3 reactions found over 15 reactions in the full pathway

Reconstruction information

External links





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