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| − | [[Category:reaction]] | + | [[Category:gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=APIGNAR-RXN APIGNAR-RXN] == | + | == Gene SJ04584 == |
| − | * direction:
| + | == Organism(s) associated with this gene == |
| − | ** left-to-right
| + | * [[S.japonica_carotenoid_curated]] |
| − | * common-name:
| + | == Reaction(s) associated == |
| − | ** naringenin chalcone isomerase
| + | * [[PROTEIN-KINASE-RXN]] |
| − | ** chalcone isomerase
| |
| − | * ec-number:
| |
| − | ** [http://enzyme.expasy.org/EC/5.5.1.6 ec-5.5.1.6]
| |
| − | == Reaction formula == | |
| − | * 1 [[CPD-20012]][c] '''=>''' 1 [[NARINGENIN-CMPD]][c] | |
| − | == Gene(s) associated with this reaction == | |
| − | * Gene: [[SJ09285]] | |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| | ** Category: [[orthology]] | | ** Category: [[orthology]] |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | * Gene: [[SJ20427]]
| + | {{#set: organism associated=S.japonica_carotenoid_curated}} |
| − | ** Category: [[annotation]]
| + | {{#set: nb reaction associated=1}} |
| − | *** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
| |
| − | ** Category: [[orthology]]
| |
| − | *** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
| |
| − | == Pathway(s) ==
| |
| − | * [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
| |
| − | ** '''5''' reactions found over '''5''' reactions in the full pathway
| |
| − | * [[PWY-6787]], flavonoid biosynthesis (in equisetum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6787 PWY-6787]
| |
| − | ** '''6''' reactions found over '''10''' reactions in the full pathway
| |
| − | * [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
| |
| − | ** '''3''' reactions found over '''4''' reactions in the full pathway
| |
| − | * [[PWY-7897]], flavonoid di-C-glucosylation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7897 PWY-7897]
| |
| − | ** '''3''' reactions found over '''15''' reactions in the full pathway
| |
| − | == Reconstruction information ==
| |
| − | * category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | == External links ==
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R02446 R02446]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P11650 P11650]
| |
| − | ** [http://www.uniprot.org/uniprot/P11651 P11651]
| |
| − | ** [http://www.uniprot.org/uniprot/P41088 P41088]
| |
| − | ** [http://www.uniprot.org/uniprot/P14298 P14298]
| |
| − | ** [http://www.uniprot.org/uniprot/Q42925 Q42925]
| |
| − | ** [http://www.uniprot.org/uniprot/Q42926 Q42926]
| |
| − | ** [http://www.uniprot.org/uniprot/Q08704 Q08704]
| |
| − | ** [http://www.uniprot.org/uniprot/P28012 P28012]
| |
| − | ** [http://www.uniprot.org/uniprot/P41089 P41089]
| |
| − | ** [http://www.uniprot.org/uniprot/O81980 O81980]
| |
| − | ** [http://www.uniprot.org/uniprot/O22604 O22604]
| |
| − | ** [http://www.uniprot.org/uniprot/O22651 O22651]
| |
| − | ** [http://www.uniprot.org/uniprot/Q43754 Q43754]
| |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=naringenin chalcone isomerase|chalcone isomerase}}
| |
| − | {{#set: ec-number=ec-5.5.1.6}}
| |
| − | {{#set: nb gene associated=2}} | |
| − | {{#set: nb pathway associated=4}}
| |
| − | {{#set: reconstruction category=orthology|annotation}}
| |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| |
| − | {{#set: reconstruction comment=n.a}}
| |
| − | {{#set: reconstruction source=saccharina_japonica_genome|output_pantograph_ectocarpus_siliculosus}}
| |
