Difference between revisions of "CPD-8347"

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(Created page with "Category:gene == Gene SJ12529 == * transcription-direction: ** positive * right-end-position: ** 93783 * left-end-position: ** 84310 * centisome-position: ** 23.567461...")
(Created page with "Category:gene == Gene SJ01689 == * transcription-direction: ** negative * right-end-position: ** 35512 * left-end-position: ** 28486 * centisome-position: ** 19.430178...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ12529 ==
+
== Gene SJ01689 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 93783
+
** 35512
 
* left-end-position:
 
* left-end-position:
−
** 84310
+
** 28486
 
* centisome-position:
 
* centisome-position:
−
** 23.567461    
+
** 19.430178    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[1TRANSKETO-RXN]]
+
* [[AKBLIG-RXN]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[2TRANSKETO-RXN]]
+
* [[SERINE-C-PALMITOYLTRANSFERASE-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[DXS-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[THREONINE-DEG2-PWY]]
−
* [[P124-PWY]]
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
** '''12''' reactions found over '''15''' reactions in the full pathway
+
* [[PWY3DJ-12]]
−
* [[CALVIN-PWY]]
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
* [[SPHINGOLIPID-SYN-PWY]]
−
* [[P185-PWY]]
+
** '''4''' reactions found over '''11''' reactions in the full pathway
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
* [[PWY-5129]]
−
* [[PWY-1861]]
+
** '''4''' reactions found over '''13''' reactions in the full pathway
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
{{#set: transcription-direction=negative}}
−
* [[P21-PWY]]
+
{{#set: right-end-position=35512}}
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
{{#set: left-end-position=28486}}
−
* [[NONOXIPENT-PWY]]
+
{{#set: centisome-position=19.430178   }}
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5723]]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6901]]
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6891]]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6892]]
 
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PYRIDOXSYN-PWY]]
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[NONMEVIPP-PWY]]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7560]]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=93783}}
 
−
{{#set: left-end-position=84310}}
 
−
{{#set: centisome-position=23.567461   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=3}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=13}}
+
{{#set: nb pathway associated=4}}

Revision as of 09:28, 27 August 2019

Gene SJ01689

  • transcription-direction:
    • negative
  • right-end-position:
    • 35512
  • left-end-position:
    • 28486
  • centisome-position:
    • 19.430178

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • THREONINE-DEG2-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY3DJ-12
    • 2 reactions found over 4 reactions in the full pathway
  • SPHINGOLIPID-SYN-PWY
    • 4 reactions found over 11 reactions in the full pathway
  • PWY-5129
    • 4 reactions found over 13 reactions in the full pathway




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