Difference between revisions of "CPD-845"

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(Created page with "Category:gene == Gene SJ04229 == * transcription-direction: ** positive * right-end-position: ** 194660 * left-end-position: ** 187785 * centisome-position: ** 36.380455...")
(Created page with "Category:gene == Gene SJ06882 == * transcription-direction: ** positive * right-end-position: ** 362793 * left-end-position: ** 349863 * centisome-position: ** 74.659256...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ04229 ==
+
== Gene SJ06882 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 194660
+
** 362793
 
* left-end-position:
 
* left-end-position:
−
** 187785
+
** 349863
 
* centisome-position:
 
* centisome-position:
−
** 36.380455    
+
** 74.659256    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[3-OXOACYL-ACP-REDUCT-RXN]]
+
* [[PROTEIN-TYROSINE-PHOSPHATASE-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[DHBDEHYD-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[GLUCONATE-5-DEHYDROGENASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RIBITOL-2-DEHYDROGENASE-RXN]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-10060]]
+
* [[RXN-11750]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10655]]
+
* [[RXN-12969]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-10659]]
+
* [[RXN-13001]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-11476]]
+
* [[RXN-13302]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-11480]]
+
* [[RXN-13303]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-13008]]
+
* [[RXN-13304]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-16616]]
+
* [[RXN-13305]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-16622]]
+
* [[RXN-13444]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-16626]]
+
* [[RXN-14485]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-16630]]
+
* [[RXN-14494]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-9514]]
+
* [[RXN-16021]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-9518]]
+
* [[RXN-16096]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-9524]]
+
* [[RXN-16113]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-16130]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9528]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-16155]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9532]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-9536]]
+
* [[RXN-17110]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-9540]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9552]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9556]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9633]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-2142]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN1G-157]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN1G-349]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN1G-469]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN1G-508]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
Line 109: Line 67:
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[FASYN-ELONG-PWY]]
+
* [[PWY-5080]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7592]]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5901]]
+
* [[PWY-5353]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''7''' reactions found over '''8''' reactions in the full pathway
−
* [[IDNCAT-PWY]]
+
* [[PWY-7724]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[RIBITOLUTIL-PWY]]
+
* [[PWY-7619]]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-6113]]
+
* [[PWY-7602]]
−
** '''8''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWYG-321]]
+
* [[PWY-7036]]
−
** '''26''' reactions found over '''182''' reactions in the full pathway
+
** '''14''' reactions found over '''16''' reactions in the full pathway
−
* [[PWY-6282]]
+
* [[PWY-7053]]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6519]]
+
* [[PWY-7606]]
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
** '''8''' reactions found over '''14''' reactions in the full pathway
−
* [[PWY-7664]]
+
* [[PWY-7727]]
−
** '''13''' reactions found over '''14''' reactions in the full pathway
 
−
* [[PWY-7663]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5971]]
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
−
* [[PWY-7388]]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5994]]
 
−
** '''31''' reactions found over '''31''' reactions in the full pathway
 
−
* [[PWY-5367]]
 
 
** '''2''' reactions found over '''6''' reactions in the full pathway
 
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5973]]
+
* [[PWY-6433]]
 +
** '''17''' reactions found over '''22''' reactions in the full pathway
 +
* [[PWY-6958]]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7049]]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7725]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6598]]
 
** '''4''' reactions found over '''5''' reactions in the full pathway
 
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5989]]
+
* [[PWY-7601]]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY3O-355]]
+
* [[PWY-7726]]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''8''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY0-862]]
+
* [[PWY-7728]]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7858]]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
 
</div>
 
</div>
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=194660}}
+
{{#set: right-end-position=362793}}
−
{{#set: left-end-position=187785}}
+
{{#set: left-end-position=349863}}
−
{{#set: centisome-position=36.380455   }}
+
{{#set: centisome-position=74.659256   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=29}}
+
{{#set: nb reaction associated=17}}
−
{{#set: nb pathway associated=19}}
+
{{#set: nb pathway associated=18}}

Revision as of 09:28, 27 August 2019

Gene SJ06882

  • transcription-direction:
    • positive
  • right-end-position:
    • 362793
  • left-end-position:
    • 349863
  • centisome-position:
    • 74.659256

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5080
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7592
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5353
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-7724
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7619
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7602
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7036
    • 14 reactions found over 16 reactions in the full pathway
  • PWY-7053
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7606
    • 8 reactions found over 14 reactions in the full pathway
  • PWY-7727
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-6433
    • 17 reactions found over 22 reactions in the full pathway
  • PWY-6958
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-7049
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7725
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6598
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7601
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7726
    • 8 reactions found over 13 reactions in the full pathway
  • PWY-7728
    • 2 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-845&oldid=34161"