Difference between revisions of "CPD-9854"

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(Created page with "Category:gene == Gene SJ15982 == * transcription-direction: ** negative * right-end-position: ** 163779 * left-end-position: ** 154241 * centisome-position: ** 53.471798...")
 
(Created page with "Category:gene == Gene SJ00348 == * transcription-direction: ** positive * right-end-position: ** 62269 * left-end-position: ** 57108 * centisome-position: ** 33.94376...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ15982 ==
+
== Gene SJ00348 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 163779
+
** 62269
 
* left-end-position:
 
* left-end-position:
−
** 154241
+
** 57108
 
* centisome-position:
 
* centisome-position:
−
** 53.471798    
+
** 33.94376    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[GAPDHSYNEC-RXN]]
−
* [[2.7.10.1-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[2.7.11.24-RXN]]
+
* [[GAPOXNPHOSPHN-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[2.7.12.1-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[2.7.12.2-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[PROTEIN-KINASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-15115]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14906]]
+
== Pathway(s) associated ==
−
** Category: [[annotation]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[GLUCONEO-PWY]]
−
* [[RXN-16317]]
+
** '''12''' reactions found over '''13''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[P124-PWY]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
** '''12''' reactions found over '''15''' reactions in the full pathway
 +
* [[P185-PWY]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P122-PWY]]
 +
** '''16''' reactions found over '''18''' reactions in the full pathway
 +
* [[PWY-5484]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-1042]]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLYCOLYSIS]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[SUCSYN-PWY]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY66-399]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-6901]]
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7003]]
 +
** '''8''' reactions found over '''6''' reactions in the full pathway
 
</div>
 
</div>
−
{{#set: transcription-direction=negative}}
+
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=163779}}
+
{{#set: right-end-position=62269}}
−
{{#set: left-end-position=154241}}
+
{{#set: left-end-position=57108}}
−
{{#set: centisome-position=53.471798   }}
+
{{#set: centisome-position=33.94376   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=7}}
+
{{#set: nb reaction associated=3}}
 +
{{#set: nb pathway associated=12}}

Revision as of 14:23, 26 August 2019

Gene SJ00348

  • transcription-direction:
    • positive
  • right-end-position:
    • 62269
  • left-end-position:
    • 57108
  • centisome-position:
    • 33.94376

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • GLUCONEO-PWY
    • 12 reactions found over 13 reactions in the full pathway
  • P124-PWY
    • 12 reactions found over 15 reactions in the full pathway
  • P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P122-PWY
    • 16 reactions found over 18 reactions in the full pathway
  • PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-1042
    • 9 reactions found over 10 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • SUCSYN-PWY
    • 6 reactions found over 7 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • PWY-6901
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-7003
    • 8 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-9854&oldid=19620"