Difference between revisions of "CPD-9854"

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(Created page with "Category:gene == Gene SJ00348 == * transcription-direction: ** positive * right-end-position: ** 62269 * left-end-position: ** 57108 * centisome-position: ** 33.94376...")
(Created page with "Category:gene == Gene SJ06616 == * transcription-direction: ** negative * right-end-position: ** 471261 * left-end-position: ** 464608 * centisome-position: ** 98.36200...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ00348 ==
+
== Gene SJ06616 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 62269
+
** 471261
 
* left-end-position:
 
* left-end-position:
−
** 57108
+
** 464608
 
* centisome-position:
 
* centisome-position:
−
** 33.94376    
+
** 98.36200    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[GAPDHSYNEC-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[3-HYDROXYDECANOYL-ACP-DEHYDR-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[3-OXOACYL-ACP-REDUCT-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[3-OXOACYL-ACP-SYNTH-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[4.2.1.58-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[4.2.1.59-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[4.2.1.61-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[ACP-S-ACETYLTRANSFER-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[ENOYL-ACP-REDUCT-NADPH-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[FATTY-ACID-SYNTHASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[MALONYL-COA-ACP-TRANSACYL-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13008]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13294]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13295]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13296]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13297]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13322]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13441]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14492]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16094]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16153]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-7697]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9514]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9515]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9518]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9520]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9521]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9524]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9526]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9528]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9530]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9532]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9533]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9534]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9535]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[GAPOXNPHOSPHN-RXN]]
+
* [[RXN-9536]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-9537]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-15115]]
+
* [[RXN-9538]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9540]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9542]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9543]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9648]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9650]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9651]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9652]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9653]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9654]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9655]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[GLUCONEO-PWY]]
+
* [[FASYN-ELONG-PWY]]
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[P124-PWY]]
+
* [[PWY-5966]]
−
** '''12''' reactions found over '''15''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[P185-PWY]]
+
* [[PWY-5965]]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[P122-PWY]]
+
* [[FASYN-INITIAL-PWY]]
−
** '''16''' reactions found over '''18''' reactions in the full pathway
+
** '''5''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-5484]]
+
* [[PWY-7388]]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-1042]]
+
* [[PWY-5971]]
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
* [[GLYCOLYSIS]]
+
* [[PWY-5994]]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
−
* [[ANAGLYCOLYSIS-PWY]]
+
* [[PWY-4381]]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[SUCSYN-PWY]]
+
* [[PWY-6799]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY66-399]]
+
* [[PWY-7036]]
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
** '''14''' reactions found over '''16''' reactions in the full pathway
−
* [[PWY-6901]]
+
* [[PWY-6433]]
−
** '''10''' reactions found over '''8''' reactions in the full pathway
+
** '''17''' reactions found over '''22''' reactions in the full pathway
−
* [[PWY-7003]]
+
* [[PWY-7724]]
−
** '''8''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7619]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7602]]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7725]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6598]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7601]]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5080]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7664]]
 +
** '''13''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-5972]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY0-862]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 
</div>
 
</div>
−
{{#set: transcription-direction=positive}}
+
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=62269}}
+
{{#set: right-end-position=471261}}
−
{{#set: left-end-position=57108}}
+
{{#set: left-end-position=464608}}
−
{{#set: centisome-position=33.94376   }}
+
{{#set: centisome-position=98.36200   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=3}}
+
{{#set: nb reaction associated=48}}
−
{{#set: nb pathway associated=12}}
+
{{#set: nb pathway associated=21}}

Revision as of 09:27, 27 August 2019

Gene SJ06616

  • transcription-direction:
    • negative
  • right-end-position:
    • 471261
  • left-end-position:
    • 464608
  • centisome-position:
    • 98.36200

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FASYN-ELONG-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5966
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5965
    • 1 reactions found over 2 reactions in the full pathway
  • FASYN-INITIAL-PWY
    • 5 reactions found over 2 reactions in the full pathway
  • PWY-7388
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-4381
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6799
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7036
    • 14 reactions found over 16 reactions in the full pathway
  • PWY-6433
    • 17 reactions found over 22 reactions in the full pathway
  • PWY-7724
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7619
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7602
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7725
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6598
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7601
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5080
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7664
    • 13 reactions found over 14 reactions in the full pathway
  • PWY-5972
    • 4 reactions found over 6 reactions in the full pathway
  • PWY0-862
    • 5 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-9854&oldid=32633"