Difference between revisions of "CPD-9868"

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(Created page with "Category:gene == Gene SJ09371 == * transcription-direction: ** positive * right-end-position: ** 502620 * left-end-position: ** 495797 * centisome-position: ** 60.414642...")
(Created page with "Category:metabolite == Metabolite CPD-9868 == * common-name: ** 3-(all-trans-nonaprenyl)benzene-1,2-diol * smiles: ** cc(=cccc(=cccc(=cccc(=cccc(=cccc(=cccc(=cccc(=cccc(=c...")
 
(8 intermediate revisions by 4 users not shown)
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[[Category:gene]]
+
[[Category:metabolite]]
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== Gene SJ09371 ==
+
== Metabolite CPD-9868 ==
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* transcription-direction:
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* common-name:
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** positive
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** 3-(all-trans-nonaprenyl)benzene-1,2-diol
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* right-end-position:
+
* smiles:
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** 502620
+
** cc(=cccc(=cccc(=cccc(=cccc(=cccc(=cccc(=cccc(=cccc(=ccc1(c(o)=c(o)c=cc=1))c)c)c)c)c)c)c)c)c
−
* left-end-position:
+
* inchi-key:
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** 495797
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** pkyzmvivzpjxfm-xbvqzqhusa-n
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* centisome-position:
+
* molecular-weight:
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** 60.414642   
+
** 723.176
−
== Organism(s) associated with this gene  ==
+
== Reaction(s) known to consume the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[RXN-9240]]
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== Reaction(s) associated ==
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== Reaction(s) known to produce the compound ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) of unknown directionality ==
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* [[2.3.1.176-RXN]]
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{{#set: common-name=3-(all-trans-nonaprenyl)benzene-1,2-diol}}
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** Category: [[orthology]]
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{{#set: inchi-key=inchikey=pkyzmvivzpjxfm-xbvqzqhusa-n}}
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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{{#set: molecular-weight=723.176}}
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[KETOACYLCOATHIOL-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[METHYLACETOACETYLCOATHIOL-RXN]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-10699]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-10700]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-10701]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-11246]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-11917]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-11921]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-12561]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-12565]]
 
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** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-12710]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-13617]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-14268]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-14274]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-14277]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* [[RXN-14394]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-14774]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-14788]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-14793]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-14799]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-14803]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-16137]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-17116]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-17778]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-17782]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-17787]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-17791]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-17795]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-17799]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* [[RXN-2006]]
 
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** Category: [[orthology]]
 
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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</div>
 
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== Pathway(s) associated ==
 
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[PWY-6061]]
 
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** '''3''' reactions found over '''29''' reactions in the full pathway
 
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* [[PWY-6174]]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-6883]]
 
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** '''5''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-6876]]
 
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** '''2''' reactions found over '''5''' reactions in the full pathway
 
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* [[ACETOACETATE-DEG-PWY]]
 
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-5177]]
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-6588]]
 
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** '''2''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-922]]
 
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** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6583]]
 
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** '''6''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-5789]]
 
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** '''8''' reactions found over '''18''' reactions in the full pathway
 
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* [[PWY1-3]]
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-7216]]
 
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** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-7401]]
 
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** '''6''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY-7391]]
 
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** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[P162-PWY]]
 
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** '''7''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5741]]
 
−
** '''2''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6863]]
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
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* [[P163-PWY]]
 
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** '''3''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7779]]
 
−
** '''2''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7778]]
 
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** '''3''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7524]]
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY66-368]]
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY66-367]]
 
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** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5676]]
 
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** '''4''' reactions found over '''5''' reactions in the full pathway
 
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* [[CENTFERM-PWY]]
 
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** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7288]]
 
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** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5136]]
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[FAO-PWY]]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY66-391]]
 
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** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[ILEUDEG-PWY]]
 
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** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5109]]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-735]]
 
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** '''16''' reactions found over '''19''' reactions in the full pathway
 
−
* [[PWY-6435]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6672]]
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7948]]
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6945]]
 
−
** '''5''' reactions found over '''17''' reactions in the full pathway
 
−
* [[PWY-6946]]
 
−
** '''6''' reactions found over '''22''' reactions in the full pathway
 
−
* [[PWY-6948]]
 
−
** '''2''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-7094]]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7654]]
 
−
** '''5''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7337]]
 
−
** '''6''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7338]]
 
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** '''6''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-7339]]
 
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** '''3''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7340]]
 
−
** '''5''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7606]]
 
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** '''8''' reactions found over '''14''' reactions in the full pathway
 
−
* [[PWY-7726]]
 
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** '''8''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-6458]]
 
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** '''1''' reactions found over '''3''' reactions in the full pathway
 
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* [[P281-PWY]]
 
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** '''2''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-6443]]
 
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** '''2''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-481]]
 
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** '''2''' reactions found over '''5''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=positive}}
 
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{{#set: right-end-position=502620}}
 
−
{{#set: left-end-position=495797}}
 
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{{#set: centisome-position=60.414642    }}
 
−
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
−
{{#set: nb reaction associated=32}}
 
−
{{#set: nb pathway associated=50}}
 

Latest revision as of 11:13, 18 March 2021

Metabolite CPD-9868

  • common-name:
    • 3-(all-trans-nonaprenyl)benzene-1,2-diol
  • smiles:
    • cc(=cccc(=cccc(=cccc(=cccc(=cccc(=cccc(=cccc(=cccc(=ccc1(c(o)=c(o)c=cc=1))c)c)c)c)c)c)c)c)c
  • inchi-key:
    • pkyzmvivzpjxfm-xbvqzqhusa-n
  • molecular-weight:
    • 723.176

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD-9868&oldid=137602"