Difference between revisions of "CPD0-1028"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALCOHOL-DEHYDROG-RXN ALCOHOL-DEHYDROG-RXN] == * direction: ** reversible * common-name: ** alcohol...")
(Created page with "Category:metabolite == Metabolite CPD0-1028 == * common-name: ** 2-cis,6-trans,10-trans-geranylgeranyl diphosphate * smiles: ** cc(=cccc(c)=cccc(c)=cccc(c)=ccop([o-])(=o)o...")
 
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[[Category:reaction]]
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[[Category:metabolite]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALCOHOL-DEHYDROG-RXN ALCOHOL-DEHYDROG-RXN] ==
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== Metabolite CPD0-1028 ==
* direction:
 
** reversible
 
 
* common-name:
 
* common-name:
** alcohol dehydrogenase (nad)
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** 2-cis,6-trans,10-trans-geranylgeranyl diphosphate
** alcohol dehydrogenase
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* smiles:
* ec-number:
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** cc(=cccc(c)=cccc(c)=cccc(c)=ccop([o-])(=o)op(=o)([o-])[o-])c
** [http://enzyme.expasy.org/EC/1.1.1.1 ec-1.1.1.1]
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* inchi-key:
== Reaction formula ==
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** oinneunvozhbox-kwbdajkesa-k
* 1 [[ETOH]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[ACETALD]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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* molecular-weight:
== Gene(s) associated with this reaction  ==
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** 447.424
* Gene: [[SJ07759]]
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== Reaction(s) known to consume the compound ==
** Category: [[annotation]]
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== Reaction(s) known to produce the compound ==
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [[RXN0-5180]]
* Gene: [[SJ21601]]
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== Reaction(s) of unknown directionality ==
** Category: [[annotation]]
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{{#set: common-name=2-cis,6-trans,10-trans-geranylgeranyl diphosphate}}
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: inchi-key=inchikey=oinneunvozhbox-kwbdajkesa-k}}
* Gene: [[SJ14768]]
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{{#set: molecular-weight=447.424}}
** Category: [[annotation]]
 
*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
 
== Pathway(s) ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
* [[PWY-6587]], pyruvate fermentation to ethanol III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6587 PWY-6587]
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
* [[PWY-5480]], pyruvate fermentation to ethanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5480 PWY-5480]
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
* [[P161-PWY]], acetylene degradation (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P161-PWY P161-PWY]
 
** '''2''' reactions found over '''5''' reactions in the full pathway
 
* [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY]
 
** '''11''' reactions found over '''16''' reactions in the full pathway
 
* [[PWY-6333]], acetaldehyde biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6333 PWY-6333]
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
* [[PWY-5486]], pyruvate fermentation to ethanol II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5486 PWY-5486]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 
** '''16''' reactions found over '''18''' reactions in the full pathway
 
* [[PWY66-21]], ethanol degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-21 PWY66-21]
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
* [[ETOH-ACETYLCOA-ANA-PWY]], ethanol degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ETOH-ACETYLCOA-ANA-PWY ETOH-ACETYLCOA-ANA-PWY]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii): [http://metacyc.org/META/NEW-IMAGE?object=PWY4LZ-257 PWY4LZ-257]
 
** '''7''' reactions found over '''7''' reactions in the full pathway
 
* [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118]
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
</div>
 
== Reconstruction information  ==
 
* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== External links  ==
 
* RHEA:
 
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25293 25293]
 
* LIGAND-RXN:
 
** [http://www.genome.jp/dbget-bin/www_bget?R00754 R00754]
 
{{#set: direction=reversible}}
 
{{#set: common-name=alcohol dehydrogenase (nad)|alcohol dehydrogenase}}
 
{{#set: ec-number=ec-1.1.1.1}}
 
{{#set: nb gene associated=3}}
 
{{#set: nb pathway associated=11}}
 
{{#set: reconstruction category=annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction comment=n.a}}
 
{{#set: reconstruction source=saccharina_japonica_genome}}
 

Latest revision as of 11:16, 18 March 2021

Metabolite CPD0-1028

  • common-name:
    • 2-cis,6-trans,10-trans-geranylgeranyl diphosphate
  • smiles:
    • cc(=cccc(c)=cccc(c)=cccc(c)=ccop([o-])(=o)op(=o)([o-])[o-])c
  • inchi-key:
    • oinneunvozhbox-kwbdajkesa-k
  • molecular-weight:
    • 447.424

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality