Difference between revisions of "CPD0-2106"

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(Created page with "Category:reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPGLUCDEHYDRAT-RXN DTDPGLUCDEHYDRAT-RXN] == * direction: ** left-to-right * common-name: ** dtdp-...")
(Created page with "Category:metabolite == Metabolite CPD0-2106 == * common-name: ** 3-oxooctanoyl-coa * smiles: ** cccccc(=o)cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(...")
 
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[[Category:reaction]]
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[[Category:metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPGLUCDEHYDRAT-RXN DTDPGLUCDEHYDRAT-RXN] ==
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== Metabolite CPD0-2106 ==
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** dtdp-glucose 4,6-dehydratase
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** 3-oxooctanoyl-coa
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* ec-number:
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* smiles:
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** [http://enzyme.expasy.org/EC/4.2.1.46 ec-4.2.1.46]
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** cccccc(=o)cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
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== Reaction formula ==
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* inchi-key:
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* 1 [[DTDP-D-GLUCOSE]][c] '''=>''' 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c] '''+''' 1 [[WATER]][c]
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** wpivbcgrgvnddt-cecatxlmsa-j
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== Gene(s) associated with this reaction  ==
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* molecular-weight:
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* Gene: [[SJ10476]]
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** 903.684
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** Category: [[orthology]]
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== Reaction(s) known to consume the compound ==
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*** Source: [[output_pantograph_arabidopsis_thaliana]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[RXN-13279-CPD-14916/NADP//CPD0-2106/NADPH/PROTON.39.]]
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* Gene: [[SJ16241]]
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* [[RXN-14277]]
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** Category: [[annotation]]
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== Reaction(s) known to produce the compound ==
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*** Source: [[saccharina_japonica_genome]], Tool: [[pathwaytools]], Assignment: go-term, Comment: n.a
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* [[RXN-13279-CPD-14916/NADP//CPD0-2106/NADPH/PROTON.39.]]
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** Category: [[orthology]]
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* [[RXN-14275]]
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*** Source: [[output_pantograph_nannochloropsis_salina]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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* [[RXN-14277]]
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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== Reaction(s) of unknown directionality ==
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* Gene: [[SJ00231]]
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{{#set: common-name=3-oxooctanoyl-coa}}
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** Category: [[orthology]]
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{{#set: inchi-key=inchikey=wpivbcgrgvnddt-cecatxlmsa-j}}
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*** Source: [[output_pantograph_ectocarpus_siliculosus]], Tool: [[pantograph]], Assignment: n.a, Comment: n.a
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{{#set: molecular-weight=903.684}}
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== Pathway(s) ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* [[PWY-6808]], dTDP-D-forosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6808 PWY-6808]
 
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** '''1''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7657]], dTDP-&beta;-L-digitoxose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7657 PWY-7657]
 
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** '''1''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7104]], dTDP-L-megosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7104 PWY-7104]
 
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** '''1''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-6973]], dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6973 PWY-6973]
 
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** '''1''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6974]], dTDP-L-olivose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6974 PWY-6974]
 
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** '''1''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-6976]], dTDP-L-mycarose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6976 PWY-6976]
 
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** '''1''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-6953]], dTDP-3-acetamido-&alpha;-D-fucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6953 PWY-6953]
 
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** '''1''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-7414]], dTDP-&alpha;-D-mycaminose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7414 PWY-7414]
 
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** '''1''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-7315]], dTDP-N-acetylthomosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7315 PWY-7315]
 
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** '''1''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7318]], dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7318 PWY-7318]
 
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** '''1''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-6942]], dTDP-D-desosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6942 PWY-6942]
 
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** '''1''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-7440]], dTDP-&beta;-L-4-epi-vancosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7440 PWY-7440]
 
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** '''1''' reactions found over '''8''' reactions in the full pathway
 
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* [[PWY-7814]], dTDP-L-daunosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7814 PWY-7814]
 
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** '''2''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-3221]]: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3221 PWY-3221]
 
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** '''1''' reactions found over '''n.a''' reactions in the full pathway
 
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* [[PWY-7413]], dTDP-6-deoxy-&alpha;-D-allose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7413 PWY-7413]
 
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** '''1''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7312]], dTDP-D-&beta;-fucofuranose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7312 PWY-7312]
 
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** '''1''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7316]], dTDP-N-acetylviosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7316 PWY-7316]
 
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** '''1''' reactions found over '''4''' reactions in the full pathway
 
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* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY]
 
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** '''3''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-7688]], dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7688 PWY-7688]
 
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** '''1''' reactions found over '''6''' reactions in the full pathway
 
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* [[PWY-7301]], dTDP-4-O-demethyl-&beta;-L-noviose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7301 PWY-7301]
 
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** '''2''' reactions found over '''5''' reactions in the full pathway
 
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</div>
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
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* category: [[annotation]]; source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R06513 R06513]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q9R5L1 Q9R5L1]
 
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** [http://www.uniprot.org/uniprot/P44914 P44914]
 
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** [http://www.uniprot.org/uniprot/P29782 P29782]
 
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** [http://www.uniprot.org/uniprot/P27830 P27830]
 
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** [http://www.uniprot.org/uniprot/P55294 P55294]
 
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** [http://www.uniprot.org/uniprot/Q9S642 Q9S642]
 
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** [http://www.uniprot.org/uniprot/P37759 P37759]
 
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** [http://www.uniprot.org/uniprot/P26391 P26391]
 
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** [http://www.uniprot.org/uniprot/Q59626 Q59626]
 
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** [http://www.uniprot.org/uniprot/P39630 P39630]
 
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** [http://www.uniprot.org/uniprot/P37777 P37777]
 
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** [http://www.uniprot.org/uniprot/P37761 P37761]
 
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** [http://www.uniprot.org/uniprot/Q54144 Q54144]
 
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** [http://www.uniprot.org/uniprot/Q56173 Q56173]
 
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** [http://www.uniprot.org/uniprot/Q55420 Q55420]
 
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** [http://www.uniprot.org/uniprot/P55293 P55293]
 
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** [http://www.uniprot.org/uniprot/O66249 O66249]
 
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** [http://www.uniprot.org/uniprot/Q9RMC4 Q9RMC4]
 
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** [http://www.uniprot.org/uniprot/O08246 O08246]
 
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** [http://www.uniprot.org/uniprot/Q9RR28 Q9RR28]
 
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** [http://www.uniprot.org/uniprot/Q9SMJ5 Q9SMJ5]
 
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</div>
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=dtdp-glucose 4,6-dehydratase}}
 
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{{#set: ec-number=ec-4.2.1.46}}
 
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{{#set: nb gene associated=3}}
 
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{{#set: nb pathway associated=20}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pantograph|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=output_pantograph_nannochloropsis_salina|output_pantograph_arabidopsis_thaliana|output_pantograph_ectocarpus_siliculosus|saccharina_japonica_genome}}
 

Latest revision as of 11:17, 18 March 2021

Metabolite CPD0-2106

  • common-name:
    • 3-oxooctanoyl-coa
  • smiles:
    • cccccc(=o)cc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
  • inchi-key:
    • wpivbcgrgvnddt-cecatxlmsa-j
  • molecular-weight:
    • 903.684

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=CPD0-2106&oldid=139456"